Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00547 ATGGAAATATTTCTCTATCTTGCTTGCCTTTTAAGATCAGATGCCTATAACTCTTTCTCTCTTGGAAAAGAAGCTAAGAACTCCAAGAAGAACAAGGTGAAGCGACGTCGCACGGAAGGAGCTGCAAAAGCGCAGCCCAGTTCCCCCGGTACAGTTGGTGAATTTGGAGAGGGTTTGATTCGGACTTGGCTGATGGATAAGCTGTGCTGTTTTAATGCTTCATACTCTCGGGTTCGGTCGGCATCGAACTACGGTAAAGGAAGAAGCCATGAAGGAGTAATCAAGTATGGATTCTGCCTTGTGAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTCGTTCAAATTCAAGAACATGAATTGGGGCTCTTTGCTATCTACGATGGTCATGTTCAACAAACTGTGCCTGCTTACTTACAAAAGCATCTCTTTTCTAATATCCTCAAAGAGGAGGACTTTTGGGTCGACCCGAACAGCTCCATCTCGAAAGCCTACGAGAAAACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACCGCTGTCACTGCTATTCTGATTAACGGTCAACGACTATGGGTGGCCAACGTTGGAGATTCACGCGCTGTTCTTTCGAGAGGCGGGGAAGCTATACAAATGACCATCGATCACGAGCCGAATGCTGAACGCAGTATCATCGAGAATAAAGGTGGCTTCGTTTCTAACATGCCAGGAGACGTACCTCGAGTGAACGGTCAGCTAGCGGTTTCGCGAGCATTTGGAGACAAGAGCCTCAAATCTCACCTACGATCGGACCCCGACATACGTGATATTAACATAGACGCCAACACAGACGTATTAATCCTCGCTAGCGACGGTCTTTGGAAGGTCATGTCGAATCAAGAAGCGGTCGATATCGCACGAAGAATCAAGGACCCGATGAAGGCTGCAAAGCAGTTAATAACAGAGGCTTTGCTGAACGAGAGTAAAGACGACATATCGTGCATTGTCGTTAGTAAAGAGCACTTTGTTCTGAACCTCCCGATCTTGCTTCTTTCAAGTTCTTGTTCTATAAGGTTTCTTGTCGTCGAGGAATTTTTGGTGAAGCTTCTGAGGAGAAGCTGCCTCCTTCATAGCTCTGGCCGACGTCGCAGTGAAATCGTCTCTATCTTCCCCTAG 1185 47.09 MEIFLYLACLLRSDAYNSFSLGKEAKNSKKNKVKRRRTEGAAKAQPSSPGTVGEFGEGLIRTWLMDKLCCFNASYSRVRSASNYGKGRSHEGVIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHVQQTVPAYLQKHLFSNILKEEDFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAIQMTIDHEPNAERSIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANTDVLILASDGLWKVMSNQEAVDIARRIKDPMKAAKQLITEALLNESKDDISCIVVSKEHFVLNLPILLLSSSCSIRFLVVEEFLVKLLRRSCLLHSSGRRRSEIVSIFP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2610033 2615836 + CmoCh09G005470.1 Cmo09g00547 388549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00547 394 Pfam Protein phosphatase 2C 104 335 IPR001932 -
Cmo09g00547 394 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Cmo09g00547 394 MobiDBLite consensus disorder prediction 27 51 - -
Cmo09g00547 394 Gene3D - 90 346 IPR036457 -
Cmo09g00547 394 SUPERFAMILY PP2C-like 90 340 IPR036457 -
Cmo09g00547 394 ProSiteProfiles PPM-type phosphatase domain profile. 95 342 IPR001932 -
Cmo09g00547 394 PANTHER PROTEIN PHOSPHATASE 2C 74 341 IPR015655 GO:0004722|GO:0006470
Cmo09g00547 394 SMART PP2C_SIG_2 106 342 IPR001932 -
Cmo09g00547 394 SMART PP2C_4 87 340 IPR001932 -
Cmo09g00547 394 CDD PP2Cc 94 340 IPR001932 -
Cmo09g00547 394 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 74 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01653 Cmo09g00547 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00421 Cmo-Chr4:2094354 Cmo09g00547 Cmo-Chr9:2610033 1.53E-147 dispersed
Cmo09g00547 Cmo-Chr9:2610033 Cmo16g00270 Cmo-Chr16:1199573 1.19E-136 dispersed
Cmo01g01653 Cmo-Chr1:12520186 Cmo09g00547 Cmo-Chr9:2610033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00547 K17506 - csv:101213414 520.39