Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00548 ATGGACGTCGTCCGATTGCAGTTTGTTGTTGGTTCGGCGTCTTCCGATCGACTACGGCTAATTTCATTCCGGAAACGAAACGTAGAGAACATTTCTTATCATTCAAGAAGTATACTTATGGCAAAATTCAATTGCTTCTCTGGCCGAACAGGGAAGAAGAAGAAGAAAACCAAGATCGATTTGGAACTAGAGAAGCCTACCGAATTGAATTATCTGTCCAGAACTTTGCATGTCAGCAGCATCCATCACTGTGAGGAGCCTTTCCAAGGTGGAGAAAGGAAGCCGTCTACCCTGGACGTTTCAGTTCTGTACCCATCAGAGAATAATTCTAAGCTGGATGTTAAGTTAACGAACAATCATGAGAGTTCTGTAGCAGGAGGAGCAGTAGAACCAGCATATGAAGGGGAGGATGAGCGAGATGACAACTCGATCAAGCGGAACCCTTCTGACTTTGATCTCCCTGCTCAAGACACGTGTGGAGAAGAATTTGAGTTTCAATTTCCAAGTTCATTGGGAAAACAATTTGATAAGATCATTATTGAAGGGGTTGATACAATCCAAAGTGGACATGTTAGTGATCCTGGAATTGGTAAGCCAGTATCTTGGGCATTACCTAGACTTAGACGCTCATGTTCTAATCTGGAAAGCAGGGATGTGCTTAGAAACTTATCTCCTCATCAGTTGCCTCCTCCGATGTCTCAGTCTTTCGAAAAACTGCAAGAATTGGCAGACGAAATGAGGAACTATGTTGATCCGGGGAGTCCAGGGTCTGTAATGACTCATCACAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTACCTTCCAGAAGCAGGAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTACAAAAGCCGTGGACTACCAATACCAAGGCTCTTCCCACCAGCTCTGCTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATCTCGAGCTGAACAGAGCAGCGGGGAAGAGTATAATGGAATCACCTGGATCAGGAGAATGTCCCGAAAACAACAAAAGCGATGATCAGGATCGGGAGAATGTGTGTATTGGAGTTTCTGGTTTATGGCCACAAAACCAGTGGGTTGCATTTTCAGCAGAATCATCTTCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGGAACTTCAACTAGAACCCTGTCTTTCAATTGACGTGGTCGGGGATGACAATGATTCAGATACTTTCTTCCCGCGAACTCCAGAGCGAACTGCAACTCACACACCCCGACGTGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCATCATTGGGTCGCTCAATTCTTCCTCAACCGTGGCTCACATCTCTGGCATTGGCTTAAAAGCCATACCCACAATCTCGCACCTATCCGGTCTTAGATCTGTCAACTTGTCTGGAAATCTCATAGATCACATTAACCCTGGATCACTGCCCAAGGGATTGCATACTCTCAACTTGTCCAGGAACAAGATCAGTGCCATTGAAGGACTCAAAGAATTAGCACGACTTCGGATACTCGATCTGAGTTACAATCGTATATCTCACATTGGACATGGGTTGTCAAACTGTGCGATTATTAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGATGGACTGCATCGACTCTTGAAGCTCACGGTTCTCGACCTAAGCTTCAACAAGATTTCAACAAACAAAGCTCTGGCCCAACTTGTTGCCAACTACAACTCTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCAGTAGTTGGCCTTCTTCCAAGTCTTGTTTATCTAAACAAGCAGGCCATCAAAGCACAGAGAGCTCGAGAAGTCGCAACTGACCGCGTTGCCAAAGCTGCACTAGGGAACGGTAGTTGGTGTTCTCATAGAAGAACATCAAGGAAAACGAGCCATATAGCATCATCATCATCTTCCATCAGTGGGCACAGGAGTAGTGCAAGTGTTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCTTACGCCATTCTTCTCTGGGGATGGATTCATCAGCCCTTGCATCATCATCGTCTCGTTAG 2127 45.46 MDVVRLQFVVGSASSDRLRLISFRKRNVENISYHSRSILMAKFNCFSGRTGKKKKKTKIDLELEKPTELNYLSRTLHVSSIHHCEEPFQGGERKPSTLDVSVLYPSENNSKLDVKLTNNHESSVAGGAVEPAYEGEDERDDNSIKRNPSDFDLPAQDTCGEEFEFQFPSSLGKQFDKIIIEGVDTIQSGHVSDPGIGKPVSWALPRLRRSCSNLESRDVLRNLSPHQLPPPMSQSFEKLQELADEMRNYVDPGSPGSVMTHHSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTTNTKALPTSSAFNQQGGYCSDNLELNRAAGKSIMESPGSGECPENNKSDDQDRENVCIGVSGLWPQNQWVAFSAESSSSLRRVDEWVKELQLEPCLSIDVVGDDNDSDTFFPRTPERTATHTPRRGEPNLTEEILYANSIIGSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIDHINPGSLPKGLHTLNLSRNKISAIEGLKELARLRILDLSYNRISHIGHGLSNCAIIKELYLAGNKISDVDGLHRLLKLTVLDLSFNKISTNKALAQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVVGLLPSLVYLNKQAIKAQRAREVATDRVAKAALGNGSWCSHRRTSRKTSHIASSSSSISGHRSSASVAHKGRHRSKAPTLRHSSLGMDSSALASSSSR 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2615867 2618675 + CmoCh09G005480.1 Cmo09g00548 388550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00548 708 SMART LRR_typ_2 558 579 IPR003591 -
Cmo09g00548 708 SMART LRR_typ_2 469 492 IPR003591 -
Cmo09g00548 708 SMART LRR_typ_2 513 536 IPR003591 -
Cmo09g00548 708 ProSiteProfiles Leucine-rich repeat profile. 515 537 IPR001611 GO:0005515
Cmo09g00548 708 PANTHER NISCHARIN RELATED 42 691 - -
Cmo09g00548 708 Gene3D Ribonuclease Inhibitor 535 631 IPR032675 -
Cmo09g00548 708 SMART LRR_sd22_2 536 557 - -
Cmo09g00548 708 SMART LRR_sd22_2 513 535 - -
Cmo09g00548 708 SMART LRR_sd22_2 491 512 - -
Cmo09g00548 708 SMART LRR_sd22_2 558 579 - -
Cmo09g00548 708 MobiDBLite consensus disorder prediction 118 150 - -
Cmo09g00548 708 MobiDBLite consensus disorder prediction 648 708 - -
Cmo09g00548 708 MobiDBLite consensus disorder prediction 692 708 - -
Cmo09g00548 708 ProSiteProfiles Leucine-rich repeat profile. 493 514 IPR001611 GO:0005515
Cmo09g00548 708 ProSiteProfiles Leucine-rich repeat profile. 538 559 IPR001611 GO:0005515
Cmo09g00548 708 Pfam Leucine rich repeat 493 549 IPR001611 GO:0005515
Cmo09g00548 708 MobiDBLite consensus disorder prediction 659 674 - -
Cmo09g00548 708 SUPERFAMILY Outer arm dynein light chain 1 460 626 - -
Cmo09g00548 708 ProSiteProfiles Leucine-rich repeat profile. 560 581 IPR001611 GO:0005515
Cmo09g00548 708 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 42 691 - -
Cmo09g00548 708 Gene3D Ribonuclease Inhibitor 431 534 IPR032675 -
Cmo09g00548 708 Pfam Leucine Rich repeat 560 572 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00548 - - - cmos:111443155 1280.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01655 Cmo09g00548 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00068 Cmo-Chr7:401730 Cmo09g00548 Cmo-Chr9:2615867 3.46E-08 dispersed
Cmo09g00548 Cmo-Chr9:2615867 Cmo19g00981 Cmo-Chr19:8820687 6.59E-71 dispersed
Cmo01g01655 Cmo-Chr1:12532660 Cmo09g00548 Cmo-Chr9:2615867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00548 Cmo_Chr09 FPKM 4.993454 6.398857 150.517746 150.501709 38.62566 37.66383 36.478439 8.60006 8.442685 8.064169