Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00555 ATGGCGGTCGCCTCTTCCCCTCGCGAGGAGTTTGTTTACCTTGCTAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTTATGGAAAAGGTCTCCGCCGCCGTAGACAACGAGGAGCTTACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGAGCGCGTAGAGCTTCCTGGAGGATTATTTCCTCCATTGAGCAGAAGGAGGAGAGCCGAGGGAACGATGATCATGTCTCGATCATCCGAGATTACAGATCCAAGATCGAGACTGAGCTGTCTAACATCTGCGATGGGATCCTTAATCTTCTTGACTCGCGCCTTATTCCCTCCGCTGCGTCCGGAGACTCCAAGGTGTTTTATCTCAAAATGAAGGGCGATTATCATAGATACCTGGCTGAATTCAAGACCGGAGCCAAGCGGAAGGAAGCTGCCGAAAGTACACTCACTGCTTATAAATCTGCTCAGGATATTGCAAATACTGAACTTTCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTCTCAGTGTTCTACTATGAGATTCTGAATTCCCCTGATCGGGCTTGCAGCCTTGCTAAACAGGCTTTCGATGAGGCAATTGCTGAGTTGGATACTCTGGGCGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCGGACATGCAGGATGATGGAGATGACATCAAAGAAGCAGCTCCCAAACGCGATGACGAATAG 777 49.55 MAVASSPREEFVYLAKLAEQAERYEEMVEFMEKVSAAVDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSIIRDYRSKIETELSNICDGILNLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAKRKEAAESTLTAYKSAQDIANTELSPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDDIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2651002 2653846 + CmoCh09G005550.1 Cmo09g00555 388557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00555 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Cmo09g00555 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cmo09g00555 258 Gene3D - 1 252 IPR036815 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cmo09g00555 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cmo09g00555 258 SMART 1433_4 8 250 IPR023410 -
Cmo09g00555 258 PIRSF 14-3-3 2 250 IPR000308 -
Cmo09g00555 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Cmo09g00555 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Cmo09g00555 258 Coils Coil 14 34 - -
Cmo09g00555 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cmo09g00555 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00534 Cmo09g00555 CCT
Cmo09g00555 Cmo12g00129 CCT
Cmo01g01661 Cmo09g00555 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00555 Cmo-Chr9:2651002 Cmo14g01165 Cmo-Chr14:9444790 7.43E-160 dispersed
Cmo01g01661 Cmo-Chr1:12565115 Cmo09g00555 Cmo-Chr9:2651002 0 wgd
Cmo12g00129 Cmo-Chr12:795393 Cmo09g00555 Cmo-Chr9:2651002 9.25E-176 wgd
Cmo05g00534 Cmo-Chr5:2590599 Cmo09g00555 Cmo-Chr9:2651002 4.88E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00555 K06630 - csv:101210822 482.641