Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00578 ATGTTCCCAAAGCCCCACCACCAACCACCGTCCCAATCTCATCCTTTTCCACGCTCCTTCCCCGTCGCCGCAACTCCGCCACCGCGCGGTTCTCCCTCCACCGTCGATGAGGCTTCCGCGGCCGGCCCTTCGCCTCTCACTCACGCCATGTTCCCCAAAGAATCGGCATCCGCCGGCGACGGAGCTTCCATAGAAGTCGTCCGCCGCCCCAGAGGTCGTCCGCCAGGATCCAAGAACAAGCCGAAGCCGGCGGCCGTTGTCGTCGCCGGCCGCGACGCTGAGCCGGCGATGAGTCCTTATGTACTTGAAGTCCCCGGTGGTAGCGATATTGTCGAGGCTGTTGCCCGATATTGCCGCCGCCGAAACACAGGGCTGTGTGTTCTCAACGCTTACGGAACCATCGCTGACGTCACTCTCCGGCAGCCGCCTTCGTCTCCTGTGGCCACCGTCACTTTCCGTGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTCGTTCCTCAAACGACGTCGTTTCCTATACCTAACGGATTCACCATCACGCTTGCGGGACCACAGGGCCAGATCTTCGGCGGCTTGGTCGCCGGATCTTTAATCAGCGCCGGAACCGTCTATGTAATCGCCGCCTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGACGAGGTCAAGAAATTAACCTTCAGCGACGTGGAAGAAGACCACTCTCCGATCTCCGGCAACAAAGATAGCGAAAGCACCGCCGCTACCGAAACCTGCGGTCTTCTCCCGATGTACAGCACTCACTCATCATCAGACGTAATATGGACGCCGGCCGCCAGACAACCGGGTCCGCCGCACCACCGCCAGTACTAA 861 59.81 MFPKPHHQPPSQSHPFPRSFPVAATPPPRGSPSTVDEASAAGPSPLTHAMFPKESASAGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGRDAEPAMSPYVLEVPGGSDIVEAVARYCRRRNTGLCVLNAYGTIADVTLRQPPSSPVATVTFRGRFDILSVCATFVPQTTSFPIPNGFTITLAGPQGQIFGGLVAGSLISAGTVYVIAASFNNPSYQRLPSEDEVKKLTFSDVEEDHSPISGNKDSESTAATETCGLLPMYSTHSSSDVIWTPAARQPGPPHHRQY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2828162 2829022 - CmoCh09G005780.1 Cmo09g00578 388580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00578 286 MobiDBLite consensus disorder prediction 231 252 - -
Cmo09g00578 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 10 281 - -
Cmo09g00578 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 281 IPR014476 GO:0003680
Cmo09g00578 286 MobiDBLite consensus disorder prediction 1 85 - -
Cmo09g00578 286 Gene3D - 98 238 - -
Cmo09g00578 286 MobiDBLite consensus disorder prediction 1 28 - -
Cmo09g00578 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cmo09g00578 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cmo09g00578 286 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cmo09g00578 286 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00578 Cmo-Chr9:2828162 Cmo15g00111 Cmo-Chr15:536548 2.37E-44 dispersed
Cmo01g01693 Cmo-Chr1:12735579 Cmo09g00578 Cmo-Chr9:2828162 3.38E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00578 - - zju:107421268 308.916