Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00579 ATGGATTGCTTGACCTCCTACTTTTTTCCCGCCACCTTAGCCTTCTCTAAGTCCTCCGTTTCAGCTTCTAAGCTGCCATTTTTCGCCGTCGCTCGTGGAGCCTTGCCGGTGTTTGGTGTTCTCAGAGCCTCTCGTACCGCCGATGCGCCGCTGTCCGTCGACGATTCGCCGGAAAACCGCTCTGATAAGGAGGTTAAACTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACCGATGCGGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATTAGAGGGAGTCGAGCTCATGCTTCAATGCTAGCTAATCAGGGATTGATAAGTGTTGCTGAAAGGGACAGTATCATTGAAGGTTTGGATGAAATTGAGAGGCGAATTGAAAGTGGTGATTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGATATGATTGGTGAACCTGCGAAGAAGCTCCATACTGCTCGAAGCCGCAACGATCAAGTTCTAACTGATTTTCGATTGTGGTGCCGGGATGCAATTGATGCTATATTAGATGCTATTAGGTACCTTCAAGTTTCCATGGTAACTCTGGCATTGAAGAACGAGGGATTAATCGTTCCGGGCTATACTCATTTACAAAGAGCGCAACCGGTTCTACTTCAGCATCTTCTCTTAGCCTTTGTTGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACTGGCCTTCCTATTGATCGTTTTATGACTGCTGAGGCTCTAGGGTTCACCGCTCCCTTGAGAAATAGTATCGATGCAGTTTCAGATCGAGATTTTGCCCTGGAATTTCTTTCTGCCAATGCCATCACCGCCATCCATCTATCAAGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCCGAAGAGTTCGGATTCGTAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCCGATCCGATGGAACTTGTTCGTGGGAAGTCGGCTAGAGTCATCGGAGACTTGGTCACCACTCTCACTTTATGCAAAGGTCTGCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTCGACAGCGTAAAAACAATATTGGGGATGCTCGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCGTTCAATCGGGAGAGAATCGAAAAGGCTTTACCTGCTGGTTATCTCGACGCCACAACACTGGCCGATTACCTCGTAAAGAAGGAGCTGCCTGTGTTGCTACTCAAATCAAATACTGGGTTAATAAACTCCAAATCAATCTGTAGATCTGGTTTGCAAGCCATCTGGAAATGGCTGTTTTCAAGTCCAAGATCCTGCAGTGCAACCATTCTGGGGCCACAGACCCGCCAATTTCGGGAAGAATCGGAGGAAAATTTGATGGAAAATTCCAACAAGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAGAAACTCTTGCACAACCGTGATTTCACAGGCTCCAAAGATTTCGCCATCTTAGCTCAAGAAACAGAGCCTCTTTTGGATGGCTCCGATCAGATCTTAGCGGTTGCGGATGTGTTATTGGCGTCGGAGAAGCGAATCAACAACCACAATGATTGGTATTCGATTCTTCAGGTTCAACGGCAATCTGATGATTCGGATCTCATCAAGAGGCAGTATCGGAGACTCGCGTTACTTCTACATCCCGACAAGAACAAATTTCCTTACGCTGATCAAGCTTTCAAGCTGGTTGCAGATTCGTGGGCTGTATTGTCCGACCACTCGAAGAAATCACTCTATGATAATGAGCTCAGTCTCTCTGCTAAGATCGATTTGTCCCAGCAGAACAAATTTCCGGTGCGCCGAAGCCAACGATCCAGTTGGAAGAAAGAGCACGAGTTTGAGAGTAACGATGGCGCCAAGGCCGATCAATCTCCAAATCAGCGGGTGAAATTATCGAGTTTCTGGACCGCTTGCCCTTACTGTTACGTGTTATTGGAGTATCCTAGGGTTTATGAGGGTTGCTGTTTGCGGTGTCAGAATTGCAAGAGGGCATTTCAGGCGGTGTTGCTTCCGTCTCTTCCGCCGCTCGTTCAGGGCCAGGAAGCCTACTATTGCTGCTGGGGTTTCTTTCCGATGGGGTTTGCCGCTCAAATTCCCGAGAAAGGTGGGAAGGGCGGCGAAACAGCGGCACCGGCGACAGCGTTCCCCAATTGGATGCCCCCAATATTCTCTAACAAGCTGCAAGAAACTAGTGGGAATGGAAAAACTGCGGCGGCGGAGGAGACGGTGACAGGTAGTGAAAGAGCGGCGGTGGTTGCTAGGACTCCGATTGCTTCAGATGTAGAAACTAGATGGGTAGTTCCTGATTTTCCTCTGCATGTTCATATCTGCTTAAGCGTTGCTCTTCTTCTATCCGTCGTCAGCATCGACCTAGTACAATTGGCTATGGCGAAGTTCTTCCCTTCAATCAATGCTGGATTTCTGTTCGACTTCAGTTGTTGGATTCTTTGTTTGTATTTGGCAGATGATCAAGGGAAGGAAAATATGGCCTTTGCTTTTCTAGACTTGAAGTTGCAAAATGCGTTGTTTCTATACAAAATTCTTGAGAAAAAAGTAGGCTCAGCCTGA 2709 47.47 MDCLTSYFFPATLAFSKSSVSASKLPFFAVARGALPVFGVLRASRTADAPLSVDDSPENRSDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLANQGLISVAERDSIIEGLDEIERRIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILDAIRYLQVSMVTLALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFVTPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKELPVLLLKSNTGLINSKSICRSGLQAIWKWLFSSPRSCSATILGPQTRQFREESEENLMENSNKVEAERLLGIAEKLLHNRDFTGSKDFAILAQETEPLLDGSDQILAVADVLLASEKRINNHNDWYSILQVQRQSDDSDLIKRQYRRLALLLHPDKNKFPYADQAFKLVADSWAVLSDHSKKSLYDNELSLSAKIDLSQQNKFPVRRSQRSSWKKEHEFESNDGAKADQSPNQRVKLSSFWTACPYCYVLLEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWGFFPMGFAAQIPEKGGKGGETAAPATAFPNWMPPIFSNKLQETSGNGKTAAAEETVTGSERAAVVARTPIASDVETRWVVPDFPLHVHICLSVALLLSVVSIDLVQLAMAKFFPSINAGFLFDFSCWILCLYLADDQGKENMAFAFLDLKLQNALFLYKILEKKVGSA 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2830537 2839156 - CmoCh09G005790.1 Cmo09g00579 388581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00579 902 Gene3D - 86 293 IPR024083 -
Cmo09g00579 902 Gene3D - 424 443 - -
Cmo09g00579 902 CDD DnaJ 565 619 IPR001623 -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 295 319 - -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 374 393 - -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 339 355 - -
Cmo09g00579 902 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cmo09g00579 902 MobiDBLite consensus disorder prediction 643 671 - -
Cmo09g00579 902 Gene3D DnaJ domain 553 651 IPR036869 -
Cmo09g00579 902 TIGRFAM argH: argininosuccinate lyase 67 444 IPR009049 GO:0004056|GO:0042450
Cmo09g00579 902 CDD Argininosuccinate_lyase 86 443 IPR009049 GO:0004056|GO:0042450
Cmo09g00579 902 MobiDBLite consensus disorder prediction 650 665 - -
Cmo09g00579 902 ProSitePatterns Nt-dnaJ domain signature. 607 626 IPR018253 -
Cmo09g00579 902 SUPERFAMILY L-aspartase-like 67 443 IPR008948 GO:0003824
Cmo09g00579 902 PRINTS DnaJ domain signature 602 622 IPR001623 -
Cmo09g00579 902 PRINTS DnaJ domain signature 586 601 IPR001623 -
Cmo09g00579 902 PRINTS DnaJ domain signature 567 585 IPR001623 -
Cmo09g00579 902 SMART dnaj_3 564 622 IPR001623 -
Cmo09g00579 902 ProSitePatterns Fumarate lyases signature. 339 348 IPR020557 GO:0003824
Cmo09g00579 902 PANTHER ARGININOSUCCINATE LYASE 78 444 IPR009049 GO:0004056|GO:0042450
Cmo09g00579 902 SUPERFAMILY Chaperone J-domain 560 630 IPR036869 -
Cmo09g00579 902 Hamap Argininosuccinate lyase [argH]. 66 541 IPR009049 GO:0004056|GO:0042450
Cmo09g00579 902 Pfam DnaJ domain 565 627 IPR001623 -
Cmo09g00579 902 ProSiteProfiles dnaJ domain profile. 565 630 IPR001623 -
Cmo09g00579 902 Gene3D Fumarase/aspartase (Central domain) 183 423 - -
Cmo09g00579 902 PRINTS Fumarate lyase superfamily signature 339 355 IPR000362 -
Cmo09g00579 902 PRINTS Fumarate lyase superfamily signature 295 322 IPR000362 -
Cmo09g00579 902 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cmo09g00579 902 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cmo09g00579 902 Pfam Lyase 70 364 IPR022761 -
Cmo09g00579 902 PANTHER ARGININOSUCCINATE LYASE 78 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00579 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101205167 799.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01695 Cmo09g00579 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00579 Cmo-Chr9:2830537 Cmo11g01464 Cmo-Chr11:10297302 2.07E-22 dispersed
Cmo14g00945 Cmo-Chr14:5018116 Cmo09g00579 Cmo-Chr9:2830537 2.56E-06 dispersed
Cmo01g01695 Cmo-Chr1:12741391 Cmo09g00579 Cmo-Chr9:2830537 0 wgd
Cmo12g00155 Cmo-Chr12:1008884 Cmo09g00579 Cmo-Chr9:2830537 0 wgd
Cmo05g00568 Cmo-Chr5:2794478 Cmo09g00579 Cmo-Chr9:2830537 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo09g00579 CST 501 781 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 55.6 2.4e-83 306.6
Cmo01g01695 CST 3 274 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 57.2 4.0e-83 305.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020012 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00579 Cmo_Chr09 FPKM 43.076504 43.837139 84.404594 82.874344 66.582466 62.674778 60.763325 2.996441 3.862933 3.953234