Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00580 ATGTTGCAGAGAGCTGCTAGTAATGCGTATTCATGGTGGTGGGCTAGTCACGTCAGGACGAAGCAATCAAAATGGCTCGAACAGAACCTCCACGACATGGAGGAGAAGGTTGATAACATGATGAGAATCATTGAAGGCGATGGGGATTCATTTGCAGAGAGAGCTGAAATGTATTATAAGAAGAGACCTGAACTTGTAGAGCATGTAGAAGATTCTTTCCGGTCATACCGAGCTTTAGCAGAGAAATATGATCACCTATCGAAGGAGTTTCAAGGCGCAAATCGGACAATAGCTTCGATCTATCCTGAACGAGTTCATTACACGATTGATGACGACGACTGTGAAGCTAATTTTTTCCCTCGAGAATCTGTTTCAACCGAAAGTCCTCACCAGTTTTCAAATGAATTGGATGGCGGCTCACCAAAACTAGGAATCCCAGAAGTTCCGAAGCTTCCTAAGAAGTGTTTTAGAAGTCCTTCCATGATAAAAAACTCAAAACTCAAGAGAAATGCTAGCACTCCTAGAAGTAGAGCTGCTTCAACTCCAAAATCAGGGCTCAACAAAACAGAAGCCTTAAAAGAGATCGATATACTACAAAAAGAAATTCTAGCCCGACAGACCGAAATGGAATTCGTGAAGAGCTTATACGAACGCGAGTGTGAGAAATATTGGGACATTGAAGAAAGTATCACAAATATGCAAAAAAGGGTCAGCAACTTACAGGATGAGTTCGGCATTGGCACTATCATTGACAATGACGAAGCTCGAACGTTAATGACGACAACGGCTTTAAAATCCTGTCGAGAAACTCTGGCCAAGTTGCAAGAGGAACAAGAGAAAACAGTTAAAGAAACAAGACTAAAGAACAGTAAAATCAAGGAAGTTTGTGCAAGGTTTGAGAGCCTCAAATGCAAACTCCTTCCATCACCAACAGATCATTATGAGTCGAGTGATTTACATGAGGATTCAAGCATTGAATCAGAATCAAAAATCTCAGACAAACTGGTTGCTTGCACGGCAGAAAACAAACATGATATAGAGCTACTTGATCAGAAGATTAGGGAGCAGCTGGAAATGGATTCAAACAGCTCATTCACCATTTCTGAGTTGGCTGAGAAAATTGACGAACTTGTAAATAAAATTGTGACAATTGAAGCTGCAGTTTCTTCTCAGACATCTCTCGTAAGCCGACTAAAATCCGAAACGGATATGCTGGAAGCAAAAGTCCAGCAATTGGAAGAAGACAAGGAGATTCTTGTGGAGGGTTCAGAGAACATGAAGAAGAAGATAAAGGAATTGGAGGATGAACTAGCCAGAGTGAAAAATCTAAACCAGAATGCAGAAATACAAAATAACAGCCTTCAAACCCATTTCACTGAAGCAAGTTGTAATCTTGATCACTTATCTGATAAGTTGCAGACCATGAAGATGGATGATGCTGAAACTTGTGACTTCTTACAAGATGTGATGATGGTCGATCCCGATGTGGAAACAACAACATCGTCAAAAAATTTAGGATTGGAGAGGAGGGAAGTCGAAACTTCGAAGCTCGGTGATGAGGAACAGAAACAATCGATTCCAGAAGAGAGACCGCGGCTCCTTGATTTGGAGGAAAACGGATTGCAGGAGGAAGAAAAGCAGCGTCCGACCTTGAGGCAGCTGTTCTTAAAGGGATTAGAAGATAGAGAGAATATTTTACTGGAGGAGTATACATCAGTTCTAAGGGACTATAAGGATGTAAGAAACAAGTTAAGTGAAGTCGAACAAAAGAACCGCGATAGCATCTTTGAATTGGCAAAGCAGGTTAAAGAACTGAAGAACACTATTTCGTCTAAAGACGACGTCATAAAATCATTAGTGAATAATGCTGAAACAGATGACGACACTAACACGATGGATACGAACCAGGAACAACCACAAGATGGCATTCACGAGGCTCCAAGCTACTTGCATTCCGAATCCTCAACTCCATATACAGATCAAGTTTCGACTCCTGATTCTTATGTTTGTTCAAGTAATGAGCCAACAGAAGGAAGCAACAGATCATTGAAAAATGCAAGAAGCTTGCCTAAAAAAGAGGATGTAAACAAAAAGGCAACTGGGGTTGATAAATCCATTACCATGTCACCGATAGAAGAAAGAATCCGCTCCGATATCGATGAACAACTAGAGATGAATCTCGAATTCTGGCTGAGATTTAGCACTACAGTCCACCAGATTCAAAAATTCCAGACATCAATCCAAGATCTGCAATCAGAGCTGCAAAAGTTGAGAGAAAACAAGCAAGAAGGAAGCGTTAAACATCAACATATTCACCAACATACAACGGAATCTGATGCTCGGCCGATATACACACAATTGAGAGAGATACAAACCGAATTATCGCTTTGGTTGGAACACAGTGCAGTACTGAAAGATGAAGTAAGCAGTAGATTTTCATCCTTATCCAACATACAAAATGAAATAGCAATAATCACAGATGAAGGTTCAGCTGAAGAAAAGACAGAACTGAGTGATTACCAATCCGCGAAGTTTCAAGGTGAAGTACTCAACATGAAGCAGGAAAATAGGAAGATAGCCGACGAATTACAAGCCGGTCAGGTTCGGGTAAAAGCGCTACAAGCCCACGTTGAGGAGGCTTTGGAAAGACTTGATAAAGAATTTGATATTTCAGCAGGCAAGAGAATTCATTCTCAATCGAAATCACTAATCCGAACACGAATTCCTTTACAGTGTTTCTTGTTTGGGATTAAGTTAAAGAAGCAAAAGCCATCACTCTTCTAA 2784 40.66 MLQRAASNAYSWWWASHVRTKQSKWLEQNLHDMEEKVDNMMRIIEGDGDSFAERAEMYYKKRPELVEHVEDSFRSYRALAEKYDHLSKEFQGANRTIASIYPERVHYTIDDDDCEANFFPRESVSTESPHQFSNELDGGSPKLGIPEVPKLPKKCFRSPSMIKNSKLKRNASTPRSRAASTPKSGLNKTEALKEIDILQKEILARQTEMEFVKSLYERECEKYWDIEESITNMQKRVSNLQDEFGIGTIIDNDEARTLMTTTALKSCRETLAKLQEEQEKTVKETRLKNSKIKEVCARFESLKCKLLPSPTDHYESSDLHEDSSIESESKISDKLVACTAENKHDIELLDQKIREQLEMDSNSSFTISELAEKIDELVNKIVTIEAAVSSQTSLVSRLKSETDMLEAKVQQLEEDKEILVEGSENMKKKIKELEDELARVKNLNQNAEIQNNSLQTHFTEASCNLDHLSDKLQTMKMDDAETCDFLQDVMMVDPDVETTTSSKNLGLERREVETSKLGDEEQKQSIPEERPRLLDLEENGLQEEEKQRPTLRQLFLKGLEDRENILLEEYTSVLRDYKDVRNKLSEVEQKNRDSIFELAKQVKELKNTISSKDDVIKSLVNNAETDDDTNTMDTNQEQPQDGIHEAPSYLHSESSTPYTDQVSTPDSYVCSSNEPTEGSNRSLKNARSLPKKEDVNKKATGVDKSITMSPIEERIRSDIDEQLEMNLEFWLRFSTTVHQIQKFQTSIQDLQSELQKLRENKQEGSVKHQHIHQHTTESDARPIYTQLREIQTELSLWLEHSAVLKDEVSSRFSSLSNIQNEIAIITDEGSAEEKTELSDYQSAKFQGEVLNMKQENRKIADELQAGQVRVKALQAHVEEALERLDKEFDISAGKRIHSQSKSLIRTRIPLQCFLFGIKLKKQKPSLF 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2840726 2843870 + CmoCh09G005800.1 Cmo09g00580 388582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00580 927 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Cmo09g00580 927 Coils Coil 395 457 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 622 642 - -
Cmo09g00580 927 Coils Coil 367 387 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 498 546 - -
Cmo09g00580 927 Coils Coil 740 767 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 504 546 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 166 186 - -
Cmo09g00580 927 Coils Coil 223 243 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 649 685 - -
Cmo09g00580 927 PANTHER PROTEIN NETWORKED 2A 1 927 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 622 698 - -
Cmo09g00580 927 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Cmo09g00580 927 Coils Coil 264 284 - -
Cmo09g00580 927 Coils Coil 570 590 - -
Cmo09g00580 927 PANTHER PROTEIN NETWORKED 2D 1 927 - -
Cmo09g00580 927 MobiDBLite consensus disorder prediction 124 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00580 - - - csv:101205249 1378.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01699 Cmo09g00580 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01834 Cmo-Chr2:10393658 Cmo09g00580 Cmo-Chr9:2840726 8.77E-38 dispersed
Cmo09g00580 Cmo-Chr9:2840726 Cmo16g00806 Cmo-Chr16:4146044 3.56E-73 dispersed
Cmo04g00921 Cmo-Chr4:4630626 Cmo09g00580 Cmo-Chr9:2840726 7.09E-67 transposed
Cmo01g01699 Cmo-Chr1:12754375 Cmo09g00580 Cmo-Chr9:2840726 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g520 . . . Bda03g00455 Bpe02g00141 . . Bma01g02583 . . Cma01g01647 Cma09g00594 . . . Cpe06g00455 . . . . . . . . . . . . . . . . . . . Lsi04g02281 Csa03g04495 Chy04g00206 . . . . . . . . . Sed05g1559 Cmo01g01699 Cmo09g00580 . . . Car09g00525 . . Bhi09g02499 Tan01g3853 Cmetu04g1542 . Hepe01g2171 Mch11g0710 . Cla11g01426 Cam11g1481 Cec11g1511 Cco11g1507 Clacu11g1642 Cmu11g1460 Cre11g1878 . . . Cme04g00236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007068 1 1 1 1 1 0 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 3 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00580 Cmo_Chr09 FPKM 4.561952 6.91119 14.941851 14.011139 65.817528 53.542412 66.853485 9.902483 8.126655 7.963367