Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00584 ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATAA 297 43.1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2871408 2872759 - CmoCh09G005840.1 Cmo09g00584 388586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00584 98 PIRSF TFIIA_gamma_hum 1 98 IPR003194 GO:0005672|GO:0006367
Cmo09g00584 98 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Cmo09g00584 98 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 98 - -
Cmo09g00584 98 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 52 98 IPR009088 GO:0005672|GO:0006367
Cmo09g00584 98 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Cmo09g00584 98 CDD TFIIA_gamma_N 4 49 IPR015872 GO:0005672|GO:0006367
Cmo09g00584 98 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Cmo09g00584 98 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 98 IPR003194 GO:0005672|GO:0006367
Cmo09g00584 98 Pfam Transcription initiation factor IIA, gamma subunit 60 98 IPR015871 GO:0005672|GO:0006367
Cmo09g00584 98 Gene3D - 55 98 IPR009088 GO:0005672|GO:0006367
Cmo09g00584 98 CDD TFIIA_gamma_C 57 98 IPR015871 GO:0005672|GO:0006367
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01525 Cmo09g00584 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01525 Cmo-Chr1:11756585 Cmo09g00584 Cmo-Chr9:2871408 4.13E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00584 K03123 - fve:101306952 190.66