Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00585 ATGTTGTCATTTCATAAAATCCAACAACTTCTGGGGTTTAGCCTTTTGACACTGTCGAAGCCATATGGGAATGTTACAGGGATAAAATACAGCAGCATTGACAACGTTTTAGAAGTTCGTGATAAAGAGGCTCATAGAGGGATGAGAGGAAAAGAATTTGAAGTGGTCGTGCAAAATGAGGAACAAATAGAGCTCTCATTCAAAAGGAACTATTCATTTAAGGACAAGGAGGTTCCATTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCTTACGCCATCTATGAGCACTTGAGGGAATGGCCGCCATTCAACCTTCCTCAAACCCGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTACATGGCGATAGCAGATAACAGAAAGAGATCGATGCCACTCCCTGACGATAGAGTAGGCGGCAGAGGCAAAACCTTGGATTTTCCTGAAGCTGTATTGCTCGTCCATCCTAGAGAAGCTGCGTTCAAGGGAGAGGTGGACGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTTCCGACGACCCTCCGCTGAATGCTGATGAGCCGTGGAAGAAAGTGTTTGGGCCTGTCTTTTTCTATCTTAATTCTGTTCCTAATGGAAGGGATCCACTTTGTTTGTGGGAAGATGCTAAAATTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTCAGAATTTCCCACCACCAAACCAACGTGCAGCTGAGGCATATGTGGGACTGGCAGCGCCGGGAGATGCTGGATCATGGCAGACCGAAACCAAGGGCTACCAATTTTGGACCAAAACAGATGCATATGGCTCGTTTAGCATCGAAAATGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTACGACGTTGTCATTAGCGTCTCTGCAGGTAGTGATATGGATGTGGGAGATCTTGTTTTTGAGCCACCTAGGAATGGTCCAACGTTGTGGGAAATAGGCATTCCTGATCGCTCTGCAGCTGAATTCTATATTCCTGATCCTAACCCAAATTATATTAACAAATTATACGTCCACCATCCAGATAGGTACGAGAGCTTTTCTCTTTCAACTATGGCGATCGCTTCTCTTAAATCTTACCCTTTTTTAATCGAGAAATCTTTCTCCACTCACTCTCCATTTTACATTCGATTCAGGCAATATGGACTGTGGGAGAGATATGCAGAATTATATCCTGATACAGACTTAGTATATACCGTTGGAGTCAGTGATTACACAAAAGATTGGTTCTTCGCTCATGTTAATCGGACTAGAAATGATGGGTCCCATTTACCAACCACGTGGCAAATCAAGTTTACACTCGATAACAACATAGATAAGAGCGGTATCTATAAATTGCGAGTGGCTTTGGCCACCGCCAATGTTGCTGAATTACAGATTCGGGTGAACAATCCAGAAGTAGAGCCGGCTCTATTTACGACAGGACAAATTGGGCACGACAATGCAATTGCAAGACATGGAATTCATGGACTCTATCGACTCTATAGTGTCGACATGTCGAGATCTGTATTGGTAGAAGGAGAGAACACCATCTTCCTTTCGCAAATTATAAATACTTCATCTTTCAACGGCGTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCGACGTCTCTACACGTTCATAA 1755 43.19 MLSFHKIQQLLGFSLLTLSKPYGNVTGIKYSSIDNVLEVRDKEAHRGMRGKEFEVVVQNEEQIELSFKRNYSFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLREWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRSMPLPDDRVGGRGKTLDFPEAVLLVHPREAAFKGEVDDKYQYSCENKDLKVHGWISMDPSDDPPLNADEPWKKVFGPVFFYLNSVPNGRDPLCLWEDAKIQMTKEVQSWPYSFPASQNFPPPNQRAAEAYVGLAAPGDAGSWQTETKGYQFWTKTDAYGSFSIENVRIGDYNLYAWVPGFIGDYRYDVVISVSAGSDMDVGDLVFEPPRNGPTLWEIGIPDRSAAEFYIPDPNPNYINKLYVHHPDRYESFSLSTMAIASLKSYPFLIEKSFSTHSPFYIRFRQYGLWERYAELYPDTDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLPTTWQIKFTLDNNIDKSGIYKLRVALATANVAELQIRVNNPEVEPALFTTGQIGHDNAIARHGIHGLYRLYSVDMSRSVLVEGENTIFLSQIINTSSFNGVMYDYIRLEGPPSDVSTRS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2873512 2880308 - CmoCh09G005850.1 Cmo09g00585 388587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00585 584 CDD RGL4_C 352 574 - -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 263 390 - -
Cmo09g00585 584 Pfam Rhamnogalacturonate lyase family 16 173 IPR010325 -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 15 197 - -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 202 263 - -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 405 582 - -
Cmo09g00585 584 Pfam Polysaccharide lyase family 4, domain II 265 335 IPR029413 -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 263 390 - -
Cmo09g00585 584 SUPERFAMILY Starch-binding domain-like 281 335 IPR013784 GO:0030246
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 15 197 - -
Cmo09g00585 584 Pfam Polysaccharide lyase family 4, domain III 350 573 IPR029411 -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 202 263 - -
Cmo09g00585 584 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 405 582 - -
Cmo09g00585 584 Gene3D - 348 574 - -
Cmo09g00585 584 Gene3D - 264 337 - -
Cmo09g00585 584 SUPERFAMILY Galactose-binding domain-like 347 574 IPR008979 -
Cmo09g00585 584 CDD RGL4_M 263 340 IPR029413 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00585 Cmo12g00167 CCT
Cmo01g01524 Cmo09g00585 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01524 Cmo-Chr1:11750520 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
Cmo12g00167 Cmo-Chr12:1101111 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
Cmo03g00891 Cmo-Chr3:6907147 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
Cmo07g00588 Cmo-Chr7:2657026 Cmo09g00585 Cmo-Chr9:2873512 2.74E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00585 K18195 - csv:101204193 903.279