Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00593 ATGGACGCTTCAGCGGGTCGAAGTTTGTATCCTTCTCACCGTACTAAAACTATTCATCTGGTGAGGCATACCCAGGGATTTCATAACGTGGCAGGGGACATGAACGAATATCCACCTCTTGATTACTTTGATGCTCAAGTTACCTCTTTAGGATGGAAACAGGTTTGCAGTCTTCGGAAATATGTACAATCATGTGGTCTTTCTAAGAGAATTGAGTTGGTCATCACATCCCCCTTGTTCAGGACTATGCAAACAGCGGTTGGAGCATTTGGTGGTGAAGTTTGCCCGGATGGCATAAATGTTCCTCCATTAATGGTGGCGAATGCAGGAAATAGCAACTGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTTGAGCTTTGTCGGGAACACTTGGGAGTTAATCCATGTGACAAGAGGCGAAGTATTGGGGGATGTCGGTCTCTTTTCCCTGCAATTGATTTTTCAATGGCAAGTTGCATTTGTTTTGTCCATGTTGCTGGATTATATACTAGGGATGGGGAAGCCATGAGTAGTGAAATGGCCATAACAGGTTCTCTTCTGCGGCTTTGGACCCGGAAGGAGAAGGAGATTGCAATTGTCAGCCACTGTGGATTCTTATTTCATGTGTTGAGTGTGTTTGGGAACGACTGTCATCGTTCTATAGAGGATGAAATCTGCAAACAGTTTGCCAACTGTGAGCTTCGTTCGTTTGTTCTTGTTGATTGGAGCATGATCGGGTCAGAATCCTCACCGAGGACAACGACGACTAGGAGGACGACGACGACGACAGCCAATTGCCCGAGACGATTACCTACGAAAGGAATCGATCTTCCCAGTGATGTTGCAGCGGAAAAACAGCATCCAGGAAGGGAGTTACAAATGAAGATAGGTGCAGTAGCAGCAACCAATGCCATGGCGCCCGTTCGCCAAGTTCCAAAGCTCTCAGAAATTTATGCGAATTCCAATGCCAATTTTAGAACCTCTCTCGTTTCGAAACGTGTCACAAATCAATTTGCTTCTGCAACACGACTCTTTTCGCCTCCTCCTCCTCCTCCTCCTTTGAGTGCAGCCTCGTCGCGACCTTCTTCCTCCGTTGTTTGTTCTTTTTCCCGCTTTTCAGGTAGATCAATCAATCCACGCTTTCTGCCTGAAGTTTCTTCATCGATTATTTCGGAAATGGACGCTTCAGGGGGGATAAGTTTGTATCCATCTCACCGTACTAAAACCATTCATCTGGTTTGTAACGAAATACTCTCTGTGGCTCTCTTCTTTCGATATCCATTTAAGTTCAATGGAGAGAAGGACGCGAACGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACATCTCTTGGATGGAAACAGGTTGCCAATCTGCGGAAACATGTACAATCATGTGGACTTGATAAGAGAATTGAGTTAGTCATTGTGTCCCCCTTATTCAGGACTATCCAAACCGCGGTTGGAGCATTTGGTGGTGAAGGTTACTCGGATGGTATAAATGTTCCTCCGTTAATGGTATCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTAGAGCTTTGTCGGGAACATTTGTTTGCAGACTTCTTTGCTGGTGTTCACCCATGTGACAAGAGGCGAAGCATTAAAGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGGCAAGTTGCATTGTTTTGTCCATATTGCTGGATTATTTTCAGTGTAATGAATATTTCTTAGAGTACGTTATGTGGCGCTTGATACAGCTTCCTGTAGTTCTTTTTTGCTGCTTGAATTTAGTGTTATTGCTCTGGACCCGGAAGGAGAAGGAGATTGCAGTTGTCAGCCACAGTGGATTCTTATTTCATTCATTGAGTGCATTTGGAAATGACTGCCGTCCACTAGTAAAGGACGAAATCTGCAAACATTTTGCCAACTGTGAGCTTCGTTCCTTTGTTCTTGTTGATAGGAGTTTAGGGAATTGTGGCCCTGACATGAAATTCTGGATGTGCCCCTGCTTTTGTACCTCTTTCTTTCGCTCAAGTATTCATATCGGAATTTATGGATTCTCTAGTAGAGGGGAGTCGAGGTTGAATTCTTTGGTGGGCTGA 2148 44.32 MDASAGRSLYPSHRTKTIHLVRHTQGFHNVAGDMNEYPPLDYFDAQVTSLGWKQVCSLRKYVQSCGLSKRIELVITSPLFRTMQTAVGAFGGEVCPDGINVPPLMVANAGNSNCPAISSLNCPPFLAVELCREHLGVNPCDKRRSIGGCRSLFPAIDFSMASCICFVHVAGLYTRDGEAMSSEMAITGSLLRLWTRKEKEIAIVSHCGFLFHVLSVFGNDCHRSIEDEICKQFANCELRSFVLVDWSMIGSESSPRTTTTRRTTTTTANCPRRLPTKGIDLPSDVAAEKQHPGRELQMKIGAVAATNAMAPVRQVPKLSEIYANSNANFRTSLVSKRVTNQFASATRLFSPPPPPPPLSAASSRPSSSVVCSFSRFSGRSINPRFLPEVSSSIISEMDASGGISLYPSHRTKTIHLVCNEILSVALFFRYPFKFNGEKDANEYLSFDYFDAQLTSLGWKQVANLRKHVQSCGLDKRIELVIVSPLFRTIQTAVGAFGGEGYSDGINVPPLMVSNAGDCNRPAISSLNCPPFLAVELCREHLFADFFAGVHPCDKRRSIKEYRSLFPAIDFSMASCIVLSILLDYFQCNEYFLEYVMWRLIQLPVVLFCCLNLVLLLWTRKEKEIAVVSHSGFLFHSLSAFGNDCRPLVKDEICKHFANCELRSFVLVDRSLGNCGPDMKFWMCPCFCTSFFRSSIHIGIYGFSSRGESRLNSLVG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2920199 2931320 - CmoCh09G005930.1 Cmo09g00593 388595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00593 715 SUPERFAMILY Phosphoglycerate mutase-like 447 668 IPR029033 -
Cmo09g00593 715 MobiDBLite consensus disorder prediction 346 365 - -
Cmo09g00593 715 MobiDBLite consensus disorder prediction 253 275 - -
Cmo09g00593 715 Gene3D - 435 708 IPR029033 -
Cmo09g00593 715 CDD HP_PGM_like 17 86 IPR013078 -
Cmo09g00593 715 Gene3D - 10 268 IPR029033 -
Cmo09g00593 715 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 1 289 - -
Cmo09g00593 715 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 397 671 - -
Cmo09g00593 715 SUPERFAMILY Phosphoglycerate mutase-like 16 245 IPR029033 -
Cmo09g00593 715 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 1 289 - -
Cmo09g00593 715 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 397 671 - -
Cmo09g00593 715 MobiDBLite consensus disorder prediction 253 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00593 - - - csv:101203298 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00593 Cmo-Chr9:2920199 Cmo16g00308 Cmo-Chr16:1409493 7.62E-93 dispersed
Cmo09g00592 Cmo-Chr9:2913430 Cmo09g00593 Cmo-Chr9:2920199 4.26E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00593 Cmo_Chr09 FPKM 11.263955 12.413423 19.77072 21.316196 31.014183 29.755014 28.76755 31.973261 32.198967 31.37606