Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00594 | ATGGAGCTCAATCAACACTACTTGTTTGAAGAACTCTTTGCTTTGAAAAGAGAAATCGATTGGGAATTTGCAATGCCCACAGACATTAATGCCTGGAATTTTGATTGCTCTGATTCTATGACAATGGATGAGCTGAACCTTAGTTACCTTCTTAATGCCCAAGGTCAGTATTCTTTTCCCGCCGATCAGTTCACGGCGGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGAGTTTTGAGGTTTACAATGGGGAATATCCGATTATGAATATGGAAGAGGAGGAGCTTGGAATTCTGGAGGATGAAATTCATAATCTTGAAGTTCAGGCCAATTGTAAAGTGGAAGCTGTTCAATCTCCTGAAGAAATCGTTCCCAACGCCGGCGATCTTGGGCCAAAAATCGTGAATTCCAATCGGAAGAAGCTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTTAATGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATCGAACTGCGATTCTCGCGGACGCGATTGAGTACGTGAAGGAACTGGTGGAGAAAATCACGAATTTGCAGAGGGAAATTGAAGCGGGGAATGATCCGAATAAGTTGGGGATTTTAAGAGATTTAAAAAGGAATGAATATTTGGTGAGAAATTCGGCGAAGTTTAATGTGGAGAGGCGAGAGGGGCAGACTGGGATAGAGATTTGCTGTGCGGCCAAGCCAGGGCTGTTGCTGTCCACTGTCCAAACTCTCGAAGCGTTGGGGCTTGATATTCAGCACTGTGTCGTTAGCTGCTTCAATGACTTCGCAATGCAAGCTTCTTGTTCCGAGGGAGAGGAGCAAAGACGTCGTATGAGCACGGAAGAAGTAAAGCAAGCGTTATTTCAAAATGCTGGGTATGGAGGAAGATGCCCGTAG | 948 | 47.36 | MELNQHYLFEELFALKREIDWEFAMPTDINAWNFDCSDSMTMDELNLSYLLNAQGQYSFPADQFTAAAAAASTGDSMSFEVYNGEYPIMNMEEEELGILEDEIHNLEVQANCKVEAVQSPEEIVPNAGDLGPKIVNSNRKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELVEKITNLQREIEAGNDPNKLGILRDLKRNEYLVRNSAKFNVERREGQTGIEICCAAKPGLLLSTVQTLEALGLDIQHCVVSCFNDFAMQASCSEGEEQRRRMSTEEVKQALFQNAGYGGRCP | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2937102 | 2938295 | + | CmoCh09G005940.1 | Cmo09g00594 | 388596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00594 | 315 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 148 | 206 | IPR036638 | GO:0046983 | |
Cmo09g00594 | 315 | Coils | Coil | 89 | 109 | - | - | |
Cmo09g00594 | 315 | PANTHER | - | 60 | 314 | - | - | |
Cmo09g00594 | 315 | SMART | finulus | 150 | 199 | IPR011598 | GO:0046983 | |
Cmo09g00594 | 315 | Pfam | Helix-loop-helix DNA-binding domain | 150 | 193 | IPR011598 | GO:0046983 | |
Cmo09g00594 | 315 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 144 | 193 | IPR011598 | GO:0046983 | |
Cmo09g00594 | 315 | CDD | ACT_UUR-ACR-like | 243 | 282 | - | - | |
Cmo09g00594 | 315 | Gene3D | - | 136 | 211 | IPR036638 | GO:0046983 | |
Cmo09g00594 | 315 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 60 | 314 | - | - | |
Cmo09g00594 | 315 | Coils | Coil | 183 | 203 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00589 | Cmo09g00594 | CCT | |
Cmo01g01513 | Cmo09g00594 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00594 | Cmo-Chr9:2937102 | Cmo12g00135 | Cmo-Chr12:844845 | 1.30E-95 | dispersed | |
Cmo01g01513 | Cmo-Chr1:11693656 | Cmo09g00594 | Cmo-Chr9:2937102 | 7.84E-114 | wgd | |
Cmo03g00895 | Cmo-Chr3:6930028 | Cmo09g00594 | Cmo-Chr9:2937102 | 5.23E-82 | wgd | |
Cmo05g00589 | Cmo-Chr5:2916192 | Cmo09g00594 | Cmo-Chr9:2937102 | 1.04E-79 | wgd | |
Cmo07g00598 | Cmo-Chr7:2685687 | Cmo09g00594 | Cmo-Chr9:2937102 | 4.12E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10358 | PF00010 | HLH | 4.30E-10 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00594 | - | - | csv:101222621 | 378.637 |