Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00594 ATGGAGCTCAATCAACACTACTTGTTTGAAGAACTCTTTGCTTTGAAAAGAGAAATCGATTGGGAATTTGCAATGCCCACAGACATTAATGCCTGGAATTTTGATTGCTCTGATTCTATGACAATGGATGAGCTGAACCTTAGTTACCTTCTTAATGCCCAAGGTCAGTATTCTTTTCCCGCCGATCAGTTCACGGCGGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGAGTTTTGAGGTTTACAATGGGGAATATCCGATTATGAATATGGAAGAGGAGGAGCTTGGAATTCTGGAGGATGAAATTCATAATCTTGAAGTTCAGGCCAATTGTAAAGTGGAAGCTGTTCAATCTCCTGAAGAAATCGTTCCCAACGCCGGCGATCTTGGGCCAAAAATCGTGAATTCCAATCGGAAGAAGCTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTTAATGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATCGAACTGCGATTCTCGCGGACGCGATTGAGTACGTGAAGGAACTGGTGGAGAAAATCACGAATTTGCAGAGGGAAATTGAAGCGGGGAATGATCCGAATAAGTTGGGGATTTTAAGAGATTTAAAAAGGAATGAATATTTGGTGAGAAATTCGGCGAAGTTTAATGTGGAGAGGCGAGAGGGGCAGACTGGGATAGAGATTTGCTGTGCGGCCAAGCCAGGGCTGTTGCTGTCCACTGTCCAAACTCTCGAAGCGTTGGGGCTTGATATTCAGCACTGTGTCGTTAGCTGCTTCAATGACTTCGCAATGCAAGCTTCTTGTTCCGAGGGAGAGGAGCAAAGACGTCGTATGAGCACGGAAGAAGTAAAGCAAGCGTTATTTCAAAATGCTGGGTATGGAGGAAGATGCCCGTAG 948 47.36 MELNQHYLFEELFALKREIDWEFAMPTDINAWNFDCSDSMTMDELNLSYLLNAQGQYSFPADQFTAAAAAASTGDSMSFEVYNGEYPIMNMEEEELGILEDEIHNLEVQANCKVEAVQSPEEIVPNAGDLGPKIVNSNRKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELVEKITNLQREIEAGNDPNKLGILRDLKRNEYLVRNSAKFNVERREGQTGIEICCAAKPGLLLSTVQTLEALGLDIQHCVVSCFNDFAMQASCSEGEEQRRRMSTEEVKQALFQNAGYGGRCP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2937102 2938295 + CmoCh09G005940.1 Cmo09g00594 388596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00594 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 206 IPR036638 GO:0046983
Cmo09g00594 315 Coils Coil 89 109 - -
Cmo09g00594 315 PANTHER - 60 314 - -
Cmo09g00594 315 SMART finulus 150 199 IPR011598 GO:0046983
Cmo09g00594 315 Pfam Helix-loop-helix DNA-binding domain 150 193 IPR011598 GO:0046983
Cmo09g00594 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Cmo09g00594 315 CDD ACT_UUR-ACR-like 243 282 - -
Cmo09g00594 315 Gene3D - 136 211 IPR036638 GO:0046983
Cmo09g00594 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 60 314 - -
Cmo09g00594 315 Coils Coil 183 203 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00589 Cmo09g00594 CCT
Cmo01g01513 Cmo09g00594 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00594 Cmo-Chr9:2937102 Cmo12g00135 Cmo-Chr12:844845 1.30E-95 dispersed
Cmo01g01513 Cmo-Chr1:11693656 Cmo09g00594 Cmo-Chr9:2937102 7.84E-114 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo09g00594 Cmo-Chr9:2937102 5.23E-82 wgd
Cmo05g00589 Cmo-Chr5:2916192 Cmo09g00594 Cmo-Chr9:2937102 1.04E-79 wgd
Cmo07g00598 Cmo-Chr7:2685687 Cmo09g00594 Cmo-Chr9:2937102 4.12E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10358 PF00010 HLH 4.30E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00594 - - csv:101222621 378.637