Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00597 ATGGCAGGAGTTTTTAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAAGCAGGTGAAGGATATCATACTAGCCATCGAGCCATCTTTTGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCTTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTGAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTGAAGGATGAAGACTCTATTGTAGCACGACAATCAATTACTAGTGGGCAAAAATTATTTTGTGGTGCTTTAAGAGAGATGACATTGCAGTTGCATCGACGGGGTAAAGTTGAGAGATGGCTTGAAGAACTGTGGATGAGGATATTGAAGTTTAAAGATGAGGTTTTGGCAATTGCCATAGAGCCTGGTTCTGTCGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCTGATACAAATGATCCACAAAAAGCTATCTCAGAAGGAAATGGGGATATTTTTAACATTTCATGGCTTGCTGGTGGGTTTCCGATATTGGATACAGTTGTGCTAGCGTCGGAAGCTAATAGGATGCTTGGTATTCTTTTGAATTTGTTGCAGACCAGTTCTGTTGCTGGTACATACACAGTAACAATTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTATCATTCTATCGGCACTGTTGGAATTTGTTCCAAGTTTTGAGATGGTAAAAGGGCGTCATGCTGCCAGTATCCAGTATTCTATAAGATCTGCACTTTTGGGATTCCTAAGGTGTTTGCATCCAGCGTTTGTAGAGCTTGGTTTTCAGTCAAGAGACAGGTTACTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAGGTAATCAGGCAAGTGGACAAAATGGTGAAGGCTGCAGATCGAGCTTCCCGTGATGCTTTGCTGGGCAAGGATGACCAATCATCAAATCAGCATAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTCCCAATGGCCATGAGGTTTCCAAGCAAGTTCGCTTAGGTCCAGATTTTCACCCAATTTCCACAGTGCGAAAAGATGGTTCTCGACAGAGTGCCATCTCTAATGGGACATCCCATGATGTTCCTACATTAGATGTTGAATCGACTCCTGCAGAGCAGATGATTGCAATGATTGGTGCCTTACTAGCTGAAGGGGAGCGAGGTGCAGAATCACTAGAAATTCTGATTTCAAATATTCACCCCGACTTGCTGTCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCCCCCCCTCCAACTACTAGGCATGGGGACTTACCTGTAACTCATCAAGTAAGTAGTCACGTACAAGTTCTGGCACCATCAGCTCCATTGAGTTCTGTGCAAACTTCAGTTTCTACTGCACAAGCTCCTTTTTCTTTGGCCACCTCCGCTGGTTCAACTTATGCCGAGTCTGCTGTCAATAGTCTCCCTGTTGACTCTAAACGCGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGCCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAATTTCAAATACATCTGATGTTGATGGTTCCATATCTTTGGGAAAATCTGCTTCGGTTCCTGTTTCTACGACAATCGAGAATTCTTCGGTATTTTCTATATCTAAAACAAAAGTTGAAGAAAAAATCATTGAAACTCCATTCCCGATTGGAACAGATCAACCAACCCCCAAATCAAAATCTCCTGATAGAGCTGAGAAAGTTGACTCTATATTAGAGATTGATGCCCCTCTGGATCCCTTGTCTACTGCTGTTGGAAAAGCTGATGATGGTTTAGTTGCAGTTAATTTGGTCGATGACTCGGCAACAAAGAGGGATGATACATCGTCTTCTATAGAATACAATCCGTATTCTCCATCAGTTACGAATGCAGCTGCATCTGAAGATACCTGTGAGGAATTGCCTCAGCTTCCTCCATACGTTGACTTGACTCCAGAACAGCAAATAAGTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCGTGCAAGAATTTAAATGGGGCAGACTGCCATCAGAAATGCTTGGCAATAATTGCTCGAATGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTACTGATTACCAACAGCAAAAGGGGCATGAGCTTGTTTTACATGTCTTATATCACCTGCATTCACTCAATATTCTAGATTCAGTGGAAAGTTCGTCTTTTGCTGTGTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCACTGCTAGATGCTTTTCCAGCTTCAGACAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCAGTTTTTCCGGACTCTACGTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGACAGTCCCGATATTGAACGTGTCACGCAAGGTCTTGGCACTGTTTGGAATTTGATTGTGAAACGTCCACATAGTCGGCAAGCTTGCTTAGATATTGCTCTTAAGTGTGCAATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCGAACAAACTCTATCGGTTAAGTTACATTTCAGATAGGATTGAACAACATGCAACAAACATGTTCCTGTCTGCAGTAGACGGCGTAGATCAGACAGATGTAAAGCCTTTACCATGTGGATCGATCGAGCAAAGCACTGGAGGAGAGGGTGAGAGTCAGGAAACATCCATTTGTGCTTCTCAAGTTTCAGATCCTGTAACCTCAGAAGACAATTCCATGAGGAGTTCACAACCTACAGTTCATGCCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCTCTATGCGTAAAGAAACCTTGTCTGCTTCAAACTGTATTTGATGCTTATGGACGGGCTCCTAAAGCCGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGCTCATCTAATGCTGAATTGCTTAGAATAATATCAGATCCACCCCCAGGAAGTGAACATCTTTTAGCAATGGTTCTACAGGTACTAACTCAAGAGACAACGCCTTCTTCCGATCTGATCGCAACCGTTAGACATTTATATGAAACTAAACTGAAGGATGTGACTATTCTCATTCCAATGTTGCCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTCGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACGCCTGTTGAAGTATTGATCGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCCTGTTTTGAGCAACGTACAGTGTTCACTCAGCAGGTTCTAGCAAAAGCCTTGAGCCAGATGGTCGAACAAACGCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTTGATTTTTTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTTTGGAGGATGCCAAAATTGTGGTTTGGTTTCTTGAAATGTGCATTTGAAACACAACCTCATTCGTTTCGAGTACTATTGCAGTTACCACCGCCACAGCTCGAAAATGCTTTGAACAAATATGTCAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGACACTCGTACTTCTGGGTATCGAAAACGAAAGGCGTTTGTAG 3930 42.75 MAGVFRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSIVARQSITSGQKLFCGALREMTLQLHRRGKVERWLEELWMRILKFKDEVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDIFNISWLAGGFPILDTVVLASEANRMLGILLNLLQTSSVAGTYTVTIVSSLAAIARKRPVHYGIILSALLEFVPSFEMVKGRHAASIQYSIRSALLGFLRCLHPAFVELGFQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDALLGKDDQSSNQHNASVDLTRKRPRLLDDEELPNGHEVSKQVRLGPDFHPISTVRKDGSRQSAISNGTSHDVPTLDVESTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLSDIVITNMKNLPKAPPPTTRHGDLPVTHQVSSHVQVLAPSAPLSSVQTSVSTAQAPFSLATSAGSTYAESAVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEAISNTSDVDGSISLGKSASVPVSTTIENSSVFSISKTKVEEKIIETPFPIGTDQPTPKSKSPDRAEKVDSILEIDAPLDPLSTAVGKADDGLVAVNLVDDSATKRDDTSSSIEYNPYSPSVTNAAASEDTCEELPQLPPYVDLTPEQQISVRNLAAEKIFDSCKNLNGADCHQKCLAIIARMVAQVDADDDIVRMLEKQVATDYQQQKGHELVLHVLYHLHSLNILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVFPDSTLELLHNLCYCDITDNQGKDSPDIERVTQGLGTVWNLIVKRPHSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDGVDQTDVKPLPCGSIEQSTGGEGESQETSICASQVSDPVTSEDNSMRSSQPTVHASSTLSLSEAERHISLLFALCVKKPCLLQTVFDAYGRAPKAVKEAVHEHIPNLITALGSSNAELLRIISDPPPGSEHLLAMVLQVLTQETTPSSDLIATVRHLYETKLKDVTILIPMLPSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFFMEILSKLVNRQVWRMPKLWFGFLKCAFETQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVLLGIENERRL 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2946885 2966549 + CmoCh09G005970.1 Cmo09g00597 388599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 523 574 - -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 948 988 - -
Cmo09g00597 1309 Pfam Symplekin tight junction protein C terminal 1094 1272 IPR022075 -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 394 415 - -
Cmo09g00597 1309 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1307 - -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 556 574 - -
Cmo09g00597 1309 Pfam Symplekin/PTA1 N-terminal 97 315 IPR032460 -
Cmo09g00597 1309 Gene3D - 2 343 IPR011989 -
Cmo09g00597 1309 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1307 - -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 395 415 - -
Cmo09g00597 1309 SUPERFAMILY ARM repeat 12 1228 IPR016024 -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 940 988 - -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 341 365 - -
Cmo09g00597 1309 MobiDBLite consensus disorder prediction 533 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00597 K06100 SYMPK; symplekin - csv:101202828 2208.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00360 Cmo-Chr3:4572948 Cmo09g00597 Cmo-Chr9:2946885 0 transposed
Cmo01g01510 Cmo-Chr1:11658415 Cmo09g00597 Cmo-Chr9:2946885 7.28E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00597 Cmo_Chr09 FPKM 5.578014 7.311975 1.461037 1.443147 3.743046 3.844087 3.938135 3.098473 2.693243 2.263227