Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00599 ATGTCGTCTCTACATTTTCTCTCTCTTCTCTCTCTCCTCATCGCCTTTCTCACCGGAATCAAATCCGACGACGAACGTCAAATCCTAACCAAACTCATCTCCTCTCTCCAATACAGAGACGCTGCCGTCTTCCACAACTGGAAACTCCAAACCCCCAAATGCAATTTCACCGGAATCGCCTGCAATTCAGACGGGTTCGTCAACGAAATTAACCTCTCCAAATGGGGTTTGACGGGCGTTCTTCCTTTTGATTCCGTTTGCCAGTTACCGGCGTTGGAGAAGCTGATTCTTCGCGCCAATTCCCTGCACGGCGAAGTGACAGAGAGTTTAAACAATTGTGTAAAACTGAAGCATTTGGATCTCAGCAGCAATGGCTTCTCCGGCTCTTTCCCGGACATACATTCGTTGCCGGAATTGGAGTATCTGTATTTGAATTCAAGTGGGTTTTCCGGTAAGTTTCCATGGAAATCCGTCGGGAATTTGAGCGGTTTGATTGAGCTGAGCGTCGGAGATAACCCTTTTGAAAACGCTACTTTTCCGGTGGAGGTCACCAATTTGAAGAGGCTTAATTTGCTGTATTTGTCGAATTGTAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACGGAGCTTCTTAGTTTTGAATTTTCCGACAATTTTGTAACAGGGAATATTCCGCCGGAGATTGGTCGCCTGCAGAAGCTCTGGCAGTTGGTGTTCTATAATAATCAATTAACGGGGACACTTCCGGTGGGATTTAGAAACCTTACCGGCCTTAAGAATTTCGATGCTTCCTTGAATTACATCCATGGGGATTTGTCGGAGTTGAGGTTTTTGACGAATTTGGTTTCTCTGCAAATGTTTGATAATCAATTTTCCGGCCATGTTCCGGTGGAGTTTGGGGAGTTTAAGTCGCTGGTTAATCTGTCCCTTTATCGGAATAGGCTTACGGGGCCTCTGCCGCATGCCATTGGTTCTTGGGCGGCGTTTGATTTCATTGATGTGTCGGAAAATTTCTTTACGGGATTGATTCCTCCGGATATGTGTAAGCAGGGGACGATGCAGAAGCTTTTGATTCTTCAGAACAATTTCTCCGGCGAGATTCCGGCGACTTACGCTAATTGCTCTACTTTGAACCGATTTAGAGTCAGTCAGAACTCACTCACCGGGGTTGTTCCGTCGGGAATTTGGGGATTGCCGAATGTGAATATAATTGATCTCGCGTCAAATCAATTGACTGGTTCGATCACTTCTGATATTGGAAAGGGTGTGTCTCTCTCTGAATTTTACGTCGGAAATAATCGGTTCTCAGGCCGATTGCCATTGGAGATTTCACAAGCGGAATCTCTTGCTTCGGTTGACTTGAGCAATAATCAGTTCTCTGATGCGCTTCCGATGACTATCGGTGATCTCAAGAATCTCGATAGCCTCGAATTGCAAGGGAATAAATTCTCTGGTTCGATTCCAGAGACGATTGGCTCGTGTAATTCTCTGAGTATCGTCAATTTGGCGGAGAATTTCTTCTCTGGACAAATTCCTTCGTCTCTAGGTTTTCTTCCGGTTCTCAACTCTTTGAATCTCTCCAATAATGACCTATCAGGTGAAATCCCCCCGACATTTTCGCATTTGAAATTGAGTCTTCTTGATCTTTCCAACAATCAATTATCTGGTTCAGTTCCTCTATCGCTATCGAATGGAGCTTACAACGAAAGCTTCGCCGGAAATCCTGGCCTTTGCAGCGAGACCGATGGCTTTTTACGACGATGTTCAAAGAGTTCTGGCACGTCCAAGGACGTTCGAATACTCGTCATTGGTATCTTCGTCGGATTAATTCTTCTCAGTGCGACACTATGGTGCTTCATAAAATTGAGAAAGAGCGACAAATATCGAGATCGGTCGCTTAAAAAGGAATTGTGGGACCTAAAATCATTCCATGTAATGACGTTCACAGAAGACGAGATATTGGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTCTACAAAGTGACAGTTGAAAATGGGAAAGAGTTAGCCGTGAAGCACATTTGGAACACCGATCCATACGAGAGGATGAACAACAACAATAACCGAAGCTCCTCTCCAATTCTACCGAAACAGAGAGCAAAGTCGTTGGAATTCGACTCGGAGGTAAAGACTCTAAGCTCAATCCGTCATGTGAATGTAGTGAAGCTATATTGCAGCATTACGAGCGAGGTCTCAAGCATGTTGGTATACGAATATATGCCTAATGGAAGCTTATGGGACAGACTTCACACGTCGACAAAAATGGAGTTAGATTGGGAAACAAGATACGAAATCGCAGTCGGAGCTGCAAAAGGATTAGAGTATCTTCATCACGGTTGCGACCAACCAGTGATTCACAGAGATGTCAAATCCAGCAACATACTTTTGGATGAATGTCTCAAACCCAAAATAGCCGATTTCGGGCTTGCCAAAATCCTCAACACAAGTGGGTTCAACGAGACAAGCCATATCGTTGCAGGCACTCCCGGCTACATCGCACCAGAGTATGGATACAGTTACAAAGTGGATGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTATTAATGGAGTTAGTGAGCGGGAAAAGAGCGATCGAGGCGGAGTTCGGAGAGAACAAGGAGATCGTGGAGTGGGTATCAAACAATTTGAAGAGCAGAGAAAGTGTATTAAAGTTGGTGGATTCAAGAATTGGCGATGCATATAAAGAGGAAGCCATAAAGGTATTAAGAATAGGAATATTGTGCACAGCCAGGGTTCCTTCCATGAGACCCACCATGAGGAGTGTGGTTCAAATGCTTGAAGAAGCCCACCCCTGTCGCCTGCTTGGGATACTCATTGCCAAAGATATCAACAACATTGATATCTAA 2916 44.72 MSSLHFLSLLSLLIAFLTGIKSDDERQILTKLISSLQYRDAAVFHNWKLQTPKCNFTGIACNSDGFVNEINLSKWGLTGVLPFDSVCQLPALEKLILRANSLHGEVTESLNNCVKLKHLDLSSNGFSGSFPDIHSLPELEYLYLNSSGFSGKFPWKSVGNLSGLIELSVGDNPFENATFPVEVTNLKRLNLLYLSNCSLTGEIPRSIGNLTELLSFEFSDNFVTGNIPPEIGRLQKLWQLVFYNNQLTGTLPVGFRNLTGLKNFDASLNYIHGDLSELRFLTNLVSLQMFDNQFSGHVPVEFGEFKSLVNLSLYRNRLTGPLPHAIGSWAAFDFIDVSENFFTGLIPPDMCKQGTMQKLLILQNNFSGEIPATYANCSTLNRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLTGSITSDIGKGVSLSEFYVGNNRFSGRLPLEISQAESLASVDLSNNQFSDALPMTIGDLKNLDSLELQGNKFSGSIPETIGSCNSLSIVNLAENFFSGQIPSSLGFLPVLNSLNLSNNDLSGEIPPTFSHLKLSLLDLSNNQLSGSVPLSLSNGAYNESFAGNPGLCSETDGFLRRCSKSSGTSKDVRILVIGIFVGLILLSATLWCFIKLRKSDKYRDRSLKKELWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVENGKELAVKHIWNTDPYERMNNNNNRSSSPILPKQRAKSLEFDSEVKTLSSIRHVNVVKLYCSITSEVSSMLVYEYMPNGSLWDRLHTSTKMELDWETRYEIAVGAAKGLEYLHHGCDQPVIHRDVKSSNILLDECLKPKIADFGLAKILNTSGFNETSHIVAGTPGYIAPEYGYSYKVDEKSDVYSFGVVLMELVSGKRAIEAEFGENKEIVEWVSNNLKSRESVLKLVDSRIGDAYKEEAIKVLRIGILCTARVPSMRPTMRSVVQMLEEAHPCRLLGILIAKDINNIDI 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2974990 2978063 + CmoCh09G005990.1 Cmo09g00599 388601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00599 971 ProSiteProfiles Leucine-rich repeat profile. 115 137 IPR001611 GO:0005515
Cmo09g00599 971 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 7 960 - -
Cmo09g00599 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 960 - -
Cmo09g00599 971 Gene3D Ribonuclease Inhibitor 236 327 IPR032675 -
Cmo09g00599 971 Gene3D Ribonuclease Inhibitor 21 178 IPR032675 -
Cmo09g00599 971 ProSiteProfiles Protein kinase domain profile. 660 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00599 971 Pfam Protein kinase domain 662 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00599 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Cmo09g00599 971 Gene3D Ribonuclease Inhibitor 333 594 IPR032675 -
Cmo09g00599 971 SUPERFAMILY L domain-like 49 352 - -
Cmo09g00599 971 SUPERFAMILY Protein kinase-like (PK-like) 651 950 IPR011009 -
Cmo09g00599 971 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cmo09g00599 971 CDD STKc_IRAK 666 951 - -
Cmo09g00599 971 Gene3D Ribonuclease Inhibitor 179 234 IPR032675 -
Cmo09g00599 971 SMART LRR_typ_2 186 210 IPR003591 -
Cmo09g00599 971 SMART LRR_typ_2 401 425 IPR003591 -
Cmo09g00599 971 SMART LRR_typ_2 234 257 IPR003591 -
Cmo09g00599 971 SMART LRR_typ_2 89 113 IPR003591 -
Cmo09g00599 971 SMART LRR_typ_2 521 544 IPR003591 -
Cmo09g00599 971 SMART LRR_typ_2 473 497 IPR003591 -
Cmo09g00599 971 SMART serkin_6 660 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00599 971 Gene3D Phosphorylase Kinase; domain 1 643 755 - -
Cmo09g00599 971 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515
Cmo09g00599 971 Pfam Leucine Rich Repeat 185 210 IPR001611 GO:0005515
Cmo09g00599 971 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Cmo09g00599 971 SUPERFAMILY L domain-like 298 581 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00597 Cmo09g00599 CCT
Cmo09g00599 Cmo12g00184 CCT
Cmo01g01507 Cmo09g00599 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01508 Cmo-Chr1:11643414 Cmo09g00599 Cmo-Chr9:2974990 0 dispersed
Cmo04g02597 Cmo-Chr4:18978819 Cmo09g00599 Cmo-Chr9:2974990 0 dispersed
Cmo09g00599 Cmo-Chr9:2974990 Cmo13g00644 Cmo-Chr13:6856844 0 dispersed
Cmo09g00599 Cmo-Chr9:2974990 Cmo09g00600 Cmo-Chr9:2978743 0 tandem
Cmo19g00527 Cmo-Chr19:6163173 Cmo09g00599 Cmo-Chr9:2974990 0 transposed
Cmo01g01507 Cmo-Chr1:11636258 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
Cmo12g00184 Cmo-Chr12:1201778 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
Cmo05g00597 Cmo-Chr5:2970194 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74568 PF00069 Pkinase 5.00E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00599 - - csv:101223100 1489.94