Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00600 ATGGCCCTCCTTTTCTACTTCTTCTTTCTTCTTCTTTCTTTCTTTTCTCAACCCATTGGAGGTGATCGATCTCTGTTTCTATCTATGATGCAAGACCTTTTGATCGGGAATTCTTCGCCGTCCGATTGGGATGTTTCCGGCGGGAGTATGTTCTGTAATTTCACCGGCGTTACCTGTAATGAAAAGGGGTTTGTGGTTGGGATTGATCTCTCCGGCAGGGAGGTTTCGGGGAAGTTTCCGGCGGATGTGTGTACTTATTTGCCGGAGTTGAGAGTGTTGCGACTTGGGCAGAGTGGCTTACGAGGAACGTTTCCACGTGGGATAACGAATTGCTCTGTTTTGGAGGAATTGGATATGAGTTTTCTGTCTATGACTGGGACGTTACCGGATTTCTCGCCGTTGAGAAACCTTAGAATTCTCGACATGTCGTATAACAACTTCACCGGCGACTTTCCGTTGTCGGTTTTCAGTTTGACGAAGCTTGAGAGGCTGAATTTCAACGAGGATAATAATTTCAATATGTGGCAGTTGCCGGAGGATTTGTCGGAGTTGACGAAGATGAAATCGATGGTGTTGACGACTTGTATGTTGGGGGGGAGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACTTGGAATTAAGCGGCAACTTCCTCGCCGGAGAAATTCCGAAAGAAATCGGGAGTTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAATCGGGGAAATTCCAGAGGAGATCGGGAATTTAACAGAACTCGTGGACTTGGACATGTCGGTCAACATGTTGACTGGGAAGCTTCCTGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAGCTTTACAACAACTCCTTAACAGGGGAGATTCCCATTTCAATTTCGAACTCAACAACGCTCACTATGTTATCGCTTTACGACAACTACATGACCGGAGAAGTTCCAAGTAATTTGGGACAATTTTCACCCATGTTGGTTCTCGACTTGTCGGAAAATCATTTCTCCGGTCCCTTACCGACAGATGTCTGTAGAGAAGGTAAATTAATGTATTTTCTCATGTTGCAAAATAAATTTTCGGGTCAAATCCCGCCGGCGTATGGTAAATGCCAGTCACTTTTACGGTTTCGAGTCAGCTGGAATTTTCTAGAAGGTCCGGTGCCGGCGGGACTTTTGGGTCTTCCACATGCTTCGATTATTGATTTTGCTAACAATAATCTTAGCGGTGAAATTCCGAATTCTTTTGCTGAAGCTAGGAATCTGTCTGAATTGTTCATGCAGAGTAACATGATTTCCGGCGAGTTGCCGCCGGGAATCTCTAAAGCGACCAATTTGGTTAAGATTGATCTTAGCAACAACTTCTTGTCTGGCCCGATTCCTTCTGAAATTGGGAATCTCAAGAGGCTTAATTTGCTGCTTTTGCAACGAAATCACCTGAATTCTTCAATACCCACTTCGCTTTCCGAGATTAAATCTCTTAATGTTCTTGATTTATCCGACAATCGACTGTCCGGTAACATCCCGGAAAGCCTCTGTGAATTGTTGCCGAACTCAATCAATTTCTCGAACAACCAACTCTCCGGTCCGATTCCTCTGTCTTTGATCAAATATGGGTTAGTGGAGAGCTTTTCCGGCAACCCAGGATTGTGCGTTTCGATTTATTTAGATTCATCCGACCAAAAATTCCCAGTTTGTTCTCAAAACCTCAACAAAAAACGGCTGAATTCCATCTGGACAATCGGAGTATCAGCGTTCATAATCTTCATCGGAGCTGCTCTGTATCTCCGACGACGATTCAGCCGAGAAAAAACAGTAATGGAACAGGACGAGACACAATCTTCATCGTTTTTCTCGTACGATGTCAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGAGAAGAACATCGTCGGCCATGGCGGCGCCGGTACAGTGTACAAAATTGAGCTAAGCAGCGGCGAAATCGTCGCCGTTAAAAGGCCATGGAGACGAAAGGGGAAAGACCGACGGTCGGATCAGGAGCAGCTGTTCTTGGACAAAGAGCTGAAAACGGAAGTGGAGACATTGGGGAGTATTAGGCATAAGAACATCGTGAAATTATACTGCCATTTCTCGAGCTTGGACTGCAGCCTTTTGGTGTATGAGTATCTGCCCAACGGCAATTTATGGGACGCCCTGCACAAGGGTTGGGTTCATTTGGACTGGCCGACACGGCACCAGATTGCGTTGGGCATAGCGCAGGGCTTGGCTTACCTTCATCATGATCTATCGCCTTCTATAATTCATAGAGACATTAAAACCACTAACATACTGTTGGATGTTCATTATCAGCCTAAAGTTGCTGATTTTGGCATTGCTAAAGTCTTGCAAGCTCGAGCTGGTAAGGACTCGACCACCACCGTCATCGCCGGTACTTACGGCTATCTTGCCCCGGAATATGCATATTCATCGAAAGCCACGACGAAGTGCGACGTGTATAGCTTTGGAATCGTGTTGATGGAGCTGATAACGGGGAAGAAGCCGGTGGAGGCGGAGTTCGGAGAGAACAAGAATATTATATATTGGGTTTCGAATAAAGTAGACACGAAGGAAGGAGCAGTAGAAGTTTTGGACAAGAAAGTTTCGTTATCGTTTAAAGATGAGATGATTCAAGTTCTAAAGATTGCAATTCGGTGCACGTACAAGAATCCTGCACTTAGACCCACCATGAAGGATGTGGTACACTTGTTGATTGAAACCGACCCTTGCAAACTCGATTCTCACAACAAATGCCCTAAACACACTACCACCACCACGAGAATCAAGAACTCATTTGACCTATGA 2862 45.18 MALLFYFFFLLLSFFSQPIGGDRSLFLSMMQDLLIGNSSPSDWDVSGGSMFCNFTGVTCNEKGFVVGIDLSGREVSGKFPADVCTYLPELRVLRLGQSGLRGTFPRGITNCSVLEELDMSFLSMTGTLPDFSPLRNLRILDMSYNNFTGDFPLSVFSLTKLERLNFNEDNNFNMWQLPEDLSELTKMKSMVLTTCMLGGRIPATIGNMTALVDLELSGNFLAGEIPKEIGSLKNLRQLELYYNSLIGEIPEEIGNLTELVDLDMSVNMLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGEVPSNLGQFSPMLVLDLSENHFSGPLPTDVCREGKLMYFLMLQNKFSGQIPPAYGKCQSLLRFRVSWNFLEGPVPAGLLGLPHASIIDFANNNLSGEIPNSFAEARNLSELFMQSNMISGELPPGISKATNLVKIDLSNNFLSGPIPSEIGNLKRLNLLLLQRNHLNSSIPTSLSEIKSLNVLDLSDNRLSGNIPESLCELLPNSINFSNNQLSGPIPLSLIKYGLVESFSGNPGLCVSIYLDSSDQKFPVCSQNLNKKRLNSIWTIGVSAFIIFIGAALYLRRRFSREKTVMEQDETQSSSFFSYDVKSFHRISFDPREIIESMVEKNIVGHGGAGTVYKIELSSGEIVAVKRPWRRKGKDRRSDQEQLFLDKELKTEVETLGSIRHKNIVKLYCHFSSLDCSLLVYEYLPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLSPSIIHRDIKTTNILLDVHYQPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAVEVLDKKVSLSFKDEMIQVLKIAIRCTYKNPALRPTMKDVVHLLIETDPCKLDSHNKCPKHTTTTTRIKNSFDL 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2978743 2981952 + CmoCh09G006000.1 Cmo09g00600 388602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00600 953 SMART LRR_typ_2 280 304 IPR003591 -
Cmo09g00600 953 SMART LRR_typ_2 87 111 IPR003591 -
Cmo09g00600 953 SMART LRR_typ_2 232 256 IPR003591 -
Cmo09g00600 953 SMART LRR_typ_2 496 520 IPR003591 -
Cmo09g00600 953 SMART LRR_typ_2 134 158 IPR003591 -
Cmo09g00600 953 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 946 - -
Cmo09g00600 953 Gene3D Transferase(Phosphotransferase) domain 1 730 943 - -
Cmo09g00600 953 SUPERFAMILY Protein kinase-like (PK-like) 622 923 IPR011009 -
Cmo09g00600 953 Pfam Protein kinase domain 646 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00600 953 Gene3D Ribonuclease Inhibitor 277 352 IPR032675 -
Cmo09g00600 953 Gene3D Phosphorylase Kinase; domain 1 627 729 - -
Cmo09g00600 953 SMART serkin_6 644 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00600 953 Gene3D Ribonuclease Inhibitor 173 276 IPR032675 -
Cmo09g00600 953 SUPERFAMILY RNI-like 68 343 - -
Cmo09g00600 953 Pfam Leucine Rich Repeat 450 472 IPR001611 GO:0005515
Cmo09g00600 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Cmo09g00600 953 Gene3D Ribonuclease Inhibitor 20 172 IPR032675 -
Cmo09g00600 953 Gene3D Ribonuclease Inhibitor 353 566 IPR032675 -
Cmo09g00600 953 SUPERFAMILY RNI-like 249 541 - -
Cmo09g00600 953 ProSiteProfiles Protein kinase domain profile. 644 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00600 953 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 946 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01507 Cmo-Chr1:11636258 Cmo09g00600 Cmo-Chr9:2978743 0 dispersed
Cmo05g00597 Cmo-Chr5:2970194 Cmo09g00600 Cmo-Chr9:2978743 0 dispersed
Cmo09g00600 Cmo-Chr9:2978743 Cmo12g00184 Cmo-Chr12:1201778 0 dispersed
Cmo09g00599 Cmo-Chr9:2974990 Cmo09g00600 Cmo-Chr9:2978743 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74569 PF00069 Pkinase 2.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00600 - - cmax:111477315 1846.63