Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00601 ATGTCGATTTCCACCTATTTCGGCGGTAGGATTTCGGTTCCGCCATTGTTGAATTCATCGGCAAGCAAAACAGCTCCATGCTCCGGCGGGAATTTGGTGATTGAATGCTCGTCGAGGCCAAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAGCCGACTGTATATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCGCGGTTTCATCAATCTCCAGCGATGAAATTGTCGAGGAATTTCAGTGTTTAGGGATTTCGTTCATTTCGCCAACCCTTTTGCACTGCTCGGAGCTCAAAACAGGACAGCATTTCGCACCGGAATTTCCATTGAAGGTGGTGGTCGTCGTCGACCTAGAATCTCATAATATTCCTGCAACTCCGGGTCTCTATCGTTTAGACTTTACTGGAATGTCTGCTCCATTGACTCCATCAAAGAGATCACGTGATCGGAACATTGTCAAGTCCAATGGGAAAGGAAAGTGGCAGAAGACATCAGGGTCTCGTTCGCATAAGCAATCCTTCAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTTCTCTTTCCTGTTTCCAGAATTGACAGCCTTGTTGGTGGAGATGGAGATGTTTTATCTAAAATTAGTGAAGAAACAGGCGTAGAAATCAGGGTAGAAGACACTATCCCTGGATGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCCGAGGAGAAGAATAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGAGGGTGATAATGCCGAGTGGACAAAGAAGGAAGACAAAGTTTCTCTTCCTGGGGAAGAATCTAAACAAAAGGAGGTTCCATATTTGCAATTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAGATTTTTGATGAAGAACCGGAGGCAGATGGGGTCGATGTTGAAAGTGATAAGCTGTCTACATTTGTTTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAATCAAACAAATGTCATCTGATAGTGGAGCACAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGTGCGCAACTTCCAGCGATGAGCTAGTCCAGATTAGCGGAGGAAATGATGTGGTTAAGAGAGCTCTTGAACTTGTTTTTCAGCAGCTAATTGAAAATTCACCCCATGATAAGGATCCTGTCACCTCAAGCATGACTGCACAGTCATCACATTCATCTGGACAGTCTCGTTCTTGGGCTCATGATTATCCTCTGGGTAGTAGTTCTTTTAATGCTCATGCAGGCCCTTACTCTGTGCCTCGTGAAGTTGGCAACTTTCATTCCAGTACACCGTCTCTTGCTCTTAATAAACAGTATGAAACCAGCATTCCTGGTCGAATCAAACCTTCTCAAGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGTAGTAGTAAAGGCTCTTCAGCAAGAGACAGGCTGTGACATCAAAGTTATTGAAAGTGCCTTGGACCCAGACGATCGCATTATACTTGTAACTGGTCCTGCGAATCCAGATGACAGAATATCACCTGTACAAGATGCGGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGTACCAGACAGCAAGGAGCAGAACTTGGTGGCTAGGTTTCTTGTTTACTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGGTCCCAAAGTGTGTTGGTGAAGATGAAGAAATGGTCCAGATAAACGGAGATCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTGAGGCAGCATTTTTTCCGTGATGCATTTCCATCAGTTAATAATCATCCAAATCCTGCATTTGTTGATAGACTTCCTTCATTTCCTTCGTATTTTGGAAGGAGGGAATTGTCACCTCCAGGAATCTATTCAAATTTAGGACCCTCATTTCACAAGTTTGATTCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGAGATGATCGACCTGCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGACTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTACAGGAGCCCATCATAGGAGAATCGCTGGATTTGGAGGAGTAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGCTGTTCCTCAAGACCTTGTCCCCGTTATTTGTGGAGAGAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAAAGCAAGGAGCTGTTGAAACTGTGATTATCATTTCTGGAACGCCTGAGCAAACCCATGCGGCTCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACGGAGTCTGGTTGA 2532 44.27 MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTAVSSISSDEIVEEFQCLGISFISPTLLHCSELKTGQHFAPEFPLKVVVVVDLESHNIPATPGLYRLDFTGMSAPLTPSKRSRDRNIVKSNGKGKWQKTSGSRSHKQSFKLSPGYAVFRVLFPVSRIDSLVGGDGDVLSKISEETGVEIRVEDTIPGCDERIVVIGGSNQETEVNPEEKNKEDNKNSEVEENEGDNAEWTKKEDKVSLPGEESKQKEVPYLQLRKALFLVSEKIFDEEPEADGVDVESDKLSTFVLRLLVLSSQVGCLLGKGGSVIKQMSSDSGAQIRILPRDKLPPCATSSDELVQISGGNDVVKRALELVFQQLIENSPHDKDPVTSSMTAQSSHSSGQSRSWAHDYPLGSSSFNAHAGPYSVPREVGNFHSSTPSLALNKQYETSIPGRIKPSQEILSFRLLCPSERVGNVIGKGGVVVKALQQETGCDIKVIESALDPDDRIILVTGPANPDDRISPVQDAVFRVQARIVKAVPDSKEQNLVARFLVYSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCVGEDEEMVQINGDPETVQDAMLQITTRLRQHFFRDAFPSVNNHPNPAFVDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDSLSGIPSLSDLRDDRPAFLHRPGAPLLSDRKPWSSQGLVEGGVGLPDFTGAHHRRIAGFGGVNNPAIITSTTVEVAVPQDLVPVICGENGECLKQIRQISDAKITITEPKQGAVETVIIISGTPEQTHAAQSLIQAFVISETESG 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2991375 2998174 - CmoCh09G006010.1 Cmo09g00601 388603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00601 843 CDD PCBP_like_KH 489 558 - -
Cmo09g00601 843 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 321 406 IPR036612 GO:0003723
Cmo09g00601 843 Gene3D K Homology domain, type 1 329 408 IPR036612 GO:0003723
Cmo09g00601 843 Gene3D K Homology domain, type 1 569 649 IPR036612 GO:0003723
Cmo09g00601 843 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 768 837 IPR036612 GO:0003723
Cmo09g00601 843 ProSiteProfiles Type-1 KH domain profile. 768 832 - -
Cmo09g00601 843 ProSiteProfiles Type-1 KH domain profile. 572 641 - -
Cmo09g00601 843 CDD PCBP_like_KH 333 401 - -
Cmo09g00601 843 CDD PCBP_like_KH 574 642 - -
Cmo09g00601 843 MobiDBLite consensus disorder prediction 40 63 - -
Cmo09g00601 843 ProSiteProfiles Type-1 KH domain profile. 331 400 - -
Cmo09g00601 843 ProSiteProfiles Type-1 KH domain profile. 193 259 - -
Cmo09g00601 843 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 490 563 IPR036612 GO:0003723
Cmo09g00601 843 MobiDBLite consensus disorder prediction 154 186 - -
Cmo09g00601 843 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 150 709 - -
Cmo09g00601 843 MobiDBLite consensus disorder prediction 244 291 - -
Cmo09g00601 843 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 567 652 IPR036612 GO:0003723
Cmo09g00601 843 Pfam KH domain 770 833 IPR004088 GO:0003723
Cmo09g00601 843 Pfam KH domain 575 641 IPR004088 GO:0003723
Cmo09g00601 843 Pfam KH domain 490 541 IPR004088 GO:0003723
Cmo09g00601 843 Pfam KH domain 196 249 IPR004088 GO:0003723
Cmo09g00601 843 Pfam KH domain 334 400 IPR004088 GO:0003723
Cmo09g00601 843 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 192 249 IPR036612 GO:0003723
Cmo09g00601 843 Pfam Family of unknown function (DUF5323) 28 86 IPR020526 GO:0003735|GO:0005840|GO:0006412|GO:0009507|GO:0019843
Cmo09g00601 843 MobiDBLite consensus disorder prediction 408 433 - -
Cmo09g00601 843 MobiDBLite consensus disorder prediction 409 433 - -
Cmo09g00601 843 CDD KH-I 770 833 - -
Cmo09g00601 843 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 150 709 - -
Cmo09g00601 843 SMART kh_6 330 405 IPR004087 GO:0003676
Cmo09g00601 843 SMART kh_6 571 646 IPR004087 GO:0003676
Cmo09g00601 843 SMART kh_6 767 837 IPR004087 GO:0003676
Cmo09g00601 843 SMART kh_6 192 262 IPR004087 GO:0003676
Cmo09g00601 843 SMART kh_6 486 566 IPR004087 GO:0003676
Cmo09g00601 843 MobiDBLite consensus disorder prediction 170 186 - -
Cmo09g00601 843 Gene3D K Homology domain, type 1 766 839 IPR036612 GO:0003723
Cmo09g00601 843 Gene3D K Homology domain, type 1 194 252 IPR036612 GO:0003723
Cmo09g00601 843 MobiDBLite consensus disorder prediction 252 290 - -
Cmo09g00601 843 ProSiteProfiles Type-1 KH domain profile. 487 554 - -
Cmo09g00601 843 Gene3D K Homology domain, type 1 487 563 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00601 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1128.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01505 Cmo09g00601 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01471 Cmo-Chr4:7521673 Cmo09g00601 Cmo-Chr9:2991375 1.35E-10 dispersed
Cmo04g02901 Cmo-Chr4:20627309 Cmo09g00601 Cmo-Chr9:2991375 2.00E-34 dispersed
Cmo09g00601 Cmo-Chr9:2991375 Cmo11g01456 Cmo-Chr11:10249366 1.22E-92 dispersed
Cmo12g01154 Cmo-Chr12:10450013 Cmo09g00601 Cmo-Chr9:2991375 2.55E-14 dispersed
Cmo01g01505 Cmo-Chr1:11620244 Cmo09g00601 Cmo-Chr9:2991375 4.25E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00601 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0