Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00612 ATGGGGAAGGGAACATCCAAAACCTATCATAATCCCATGGTTTTCTTTCTCTTCCTCCTTCTGGTGAATCAATATTCAGCTGCTCTCCACCACCGCCTCCATGAAACTCACCTTCTTTTATCCTTCAAAGCCTCTGTTTCCAGAGACCCATCACGCCTTCTCTCCAACTGGGTTCCTTCTATTCCCACCTGCCGATGGAATGGCATCACATGCAGCAATCACACCGACTCTAGCTTCACTAACATCACGGCTGTTAACCTCTCCGGCAAGAACATCACCGCCACACTCTCCCACTCTGTTTTCCGACTACCCCACATCCAAATTCTCGACCTTTCCGACAACCAATTCGTCGGGGAACTCCCTTGGAATATGTTCGCCGTCGCCGTCGCCTCTTCTCTTCTGCATTTGAATTTGAGTAACAATAATTTCACCGGCCCACTTCCCACCGGCGGCGTCTCTGTTCTTCAAACATTAGACTTATCCAACAACATGATTTCGGGTTCAATTCCCAAAGATATTGGATTGTTGTTCTCTGATCTTCAATTTCTTGATCTGGGTGGGAATGTTTTGACCGGAGAGATTCCGAACTCTGTTGCGAATCTCAAATCGTTGGAGTTTTTAACATTGGCCTCTAATAAACTGAGCGGCGAAGTTCCGACGGAATTGGGCGGAATGAAGAGACTCCGGTGGATTTATTTGGGTTACAATAATCTTTCCGGGCAAATTCCTGAAGAAATCGGCCAATTGGGTTCTTTGAATCATCTTGATCTTGTTTACAACAAGCTAACAGGGAAAATTCCAGAATCTTTTGGGAATCTCACAAGACTTCAATATCTGTTCCTCTACCAAAATGGTCTCACCGGTAAAATTCCTCCGTCGATTTTCCGTCTTGTGAATTTGATTTCTCTGGATTTAAGCGATAATTCTCTCTCGGGAGAGATTCCGGAGCTTGTAATTCATTTACAGAGATTGGAGATTTTGCATCTGTTTGGTAATAATTTCATCGGAAAAATCCCGAGAGCTCTGGCTTCACTGCCTCGCCTGCAGATTCTTCAGTTATGGTCGAACGGGTTTTCCGGCGAAATCCCGGAGCTACTTGGACGGCGAAACAATCTCACCATTCTCGACGTTTCGACTAATTTCCTTACCGGAAAAATCCCAGATGGGCTCTGTGATTCTAAGCGCCTCTTTAAACTCATCCTTTTCTCCAACTCTCTCACCGGCGAAATTCCACGGAGTCTCTGTTCTTGCAAGAGTTTACGGCGAGTTCGGCTTCAACACAACCGTCTCTCCGGCGAATTGTGTCCGGAATTTACGAAACTGCCACTACTGTACTTTTTGGATATCTCCGGCAACCAATTTTCCGGTGGAATCGACGGCAACAAATGGGATTTGCCGTCTCTTCAGATGATGAGTTTAGCGAGGAATAGATTTTCAGGGAACTTGCCGGAATTTATAAGAAAGGGTAAAATCGAGAGTTTGGATTTCTCGGCGAACGAATTTTCGGGTTGGATCCCGGAGAGTATCGGAAGGTTTTCAGAGCTAATGGAACTTAATTTGAGTAACAACAATCTCGCCGGTCGGATTCCGTGTGAAATTTCTTCCTGTAAGAAGCTCGTGAGTTTAGATTTAAGCCACAATCAGCTAATCGGCGAAATTCCGGTGATTCTCACTCAAATTCCTGTTCTTAGCTTCCTTGATTTGTCGGAAAACGAATTATCCGGCGAAATTCCACCGGTTTTCGGCCGATTTCCATCGCTTGTTCAGATAAATATTTCCCACAACCACTTTTACGGAGCGTTGCCGTCCACCGGAGCGTTTTTGGACATAAACGCCAGCGCAGTAGCCGGCAATGATCTTTGCGGCGGCGATATAATTACGAGCAAATTACCGGCATGCGAAAACCGTGGGTATAACCACTTATGGTGGTTCATGCTCGTATTGGGGCTGGCCGCGTTGTTCATTGCGACGGCAGTGTTGGTTACAATACGACGTCGTAAGCTGACAAAAATAGTGCTAAACGACGACGGAATATGGGAGGTTAAATTCTTCGATCCGGACGCGTCCAAATTGGTGACGGTGGAGGCGATTCTGTCGTCGGCGGAGGGCGACAAAAGCGGGATATTAGTGGGGACCAACGAGGTTCAATTTGTGGTCGTTAAGAAATGGATAGCTGAAGGGCATTTTTGGAACGAAGTTGAGGAATTGGGGCGGCTTAGACACCCAAACGTAGTGAGGTTGCTCGGCGCGTGCCGGTCCGAGAAAGCTGGATACTTGGTCCGTGAATATGTCCGGGGACAATATTTGAGTGAAGCTGTCCGGAATTTCACCTGGGAACGACGTCGTAATATCGCCCTCGGAATCGCCCGCGCTTTGCAGTTTCTCCACCCCCGCTGTTCCCCCGGAGTTATTGCCGTCAATTTCTCCCCGGAGAAGATCATCATCGATGAAAAACACCAACCCCGGCTTCTCATCGGATTGTCCACCACCACCGTTTCTCCACTCTACTTCGCTCCCGAGGCCAAGGAAAGTAGGGACATAACGGAGAAAAGCAACGTATACACATTGGGGCTGATTCTGATCCAATTGGTAACCGGAAAAGGACCCGTTGACCGGCAAGACCTGGTGGAATGGGCACGCTACTGCTACTCCGATTGTCATACCGACACGTGGGTTGATGGTAGGATTAGCGGGGACGCTGCCGCCGCTGACACGAACCAGATCGTTGGGTTTATGAACTTAGCACTGAACTGCACCGCAGGCGAGCCCATGGCGAGGCCGTCGTCACAGCATGCTTACAAATCCCTACTGTGTCTTTGTCGGACGACTTACTGTTCTAAACTTTTGTCCTCCTAG 2856 47.97 MGKGTSKTYHNPMVFFLFLLLVNQYSAALHHRLHETHLLLSFKASVSRDPSRLLSNWVPSIPTCRWNGITCSNHTDSSFTNITAVNLSGKNITATLSHSVFRLPHIQILDLSDNQFVGELPWNMFAVAVASSLLHLNLSNNNFTGPLPTGGVSVLQTLDLSNNMISGSIPKDIGLLFSDLQFLDLGGNVLTGEIPNSVANLKSLEFLTLASNKLSGEVPTELGGMKRLRWIYLGYNNLSGQIPEEIGQLGSLNHLDLVYNKLTGKIPESFGNLTRLQYLFLYQNGLTGKIPPSIFRLVNLISLDLSDNSLSGEIPELVIHLQRLEILHLFGNNFIGKIPRALASLPRLQILQLWSNGFSGEIPELLGRRNNLTILDVSTNFLTGKIPDGLCDSKRLFKLILFSNSLTGEIPRSLCSCKSLRRVRLQHNRLSGELCPEFTKLPLLYFLDISGNQFSGGIDGNKWDLPSLQMMSLARNRFSGNLPEFIRKGKIESLDFSANEFSGWIPESIGRFSELMELNLSNNNLAGRIPCEISSCKKLVSLDLSHNQLIGEIPVILTQIPVLSFLDLSENELSGEIPPVFGRFPSLVQINISHNHFYGALPSTGAFLDINASAVAGNDLCGGDIITSKLPACENRGYNHLWWFMLVLGLAALFIATAVLVTIRRRKLTKIVLNDDGIWEVKFFDPDASKLVTVEAILSSAEGDKSGILVGTNEVQFVVVKKWIAEGHFWNEVEELGRLRHPNVVRLLGACRSEKAGYLVREYVRGQYLSEAVRNFTWERRRNIALGIARALQFLHPRCSPGVIAVNFSPEKIIIDEKHQPRLLIGLSTTTVSPLYFAPEAKESRDITEKSNVYTLGLILIQLVTGKGPVDRQDLVEWARYCYSDCHTDTWVDGRISGDAAAADTNQIVGFMNLALNCTAGEPMARPSSQHAYKSLLCLCRTTYCSKLLSS 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3049038 3053247 + CmoCh09G006120.1 Cmo09g00612 388614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00612 951 SUPERFAMILY L domain-like 222 605 - -
Cmo09g00612 951 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 948 - -
Cmo09g00612 951 SUPERFAMILY Protein kinase-like (PK-like) 707 939 IPR011009 -
Cmo09g00612 951 Gene3D Ribonuclease Inhibitor 320 488 IPR032675 -
Cmo09g00612 951 Gene3D Ribonuclease Inhibitor 77 319 IPR032675 -
Cmo09g00612 951 SMART LRR_typ_2 201 225 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 512 536 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 345 369 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 103 127 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 465 489 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 273 297 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 249 272 IPR003591 -
Cmo09g00612 951 SMART LRR_typ_2 152 176 IPR003591 -
Cmo09g00612 951 ProSiteProfiles Protein kinase domain profile. 644 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00612 951 Gene3D Phosphorylase Kinase; domain 1 700 765 - -
Cmo09g00612 951 Pfam Leucine rich repeat 492 549 IPR001611 GO:0005515
Cmo09g00612 951 Pfam Leucine rich repeat 227 286 IPR001611 GO:0005515
Cmo09g00612 951 Gene3D Ribonuclease Inhibitor 489 630 IPR032675 -
Cmo09g00612 951 Pfam Leucine Rich Repeat 180 201 IPR001611 GO:0005515
Cmo09g00612 951 Gene3D Ribonuclease Inhibitor 28 76 IPR032675 -
Cmo09g00612 951 PRINTS Leucine-rich repeat signature 155 168 - -
Cmo09g00612 951 PRINTS Leucine-rich repeat signature 297 310 - -
Cmo09g00612 951 SUPERFAMILY RNI-like 59 294 - -
Cmo09g00612 951 Gene3D Transferase(Phosphotransferase) domain 1 766 946 - -
Cmo09g00612 951 ProSiteProfiles Leucine-rich repeat profile. 299 321 IPR001611 GO:0005515
Cmo09g00612 951 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Cmo09g00612 951 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Cmo09g00612 951 PANTHER - 6 948 - -
Cmo09g00612 951 Pfam Protein kinase domain 725 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00612 - - - cpep:111786546 1582.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01494 Cmo09g00612 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00612 Cmo-Chr9:3049038 Cmo07g00617 Cmo-Chr7:2778362 4.34E-148 dispersed
Cmo01g01494 Cmo-Chr1:11551326 Cmo09g00612 Cmo-Chr9:3049038 0 wgd
Cmo03g00910 Cmo-Chr3:6986445 Cmo09g00612 Cmo-Chr9:3049038 2.27E-150 wgd
Cmo07g00616 Cmo-Chr7:2771862 Cmo09g00612 Cmo-Chr9:3049038 2.44E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006305 1 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 3 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74571 PF00069 Pkinase 9.20E-19 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00612 Cmo_Chr09 FPKM 6.587986 7.658279 11.980997 11.769258 0.622628 0.648934 0.65569 0.238317 0.291635 0.230333