Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00613 ATGATGGCTGTCACTTCCGCCTGCAAGGATTCTGCTACCAAGATCAGCAGCTTGGATAATGGGAAGTATGTTCGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCAATGCGCCGCCAGCAGCTCATTCGGGAGTGCCCAATTCTCTCCGACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAACCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATCGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGTGAGTCTGTGGTGACAAGTGGTCAGCAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTGTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTTGAACCCACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGCTACACATCGGTTTTGGAGGATGGCAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTATCAAGTGGGTATTTGATAAGACCTTGTGAGGGTGGTGGATCAATAATCCATATGGTTGATCACATGGACTTAGAACCATGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGCTCTTCGTTCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCGGTAAACGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATGTCATATTCTAATGGCTTTCCATCTATGAGCAACGCCGTGCTTTGTGCAAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGTTCAGAATGGGCCGACAGCAGTATTGATGCCTACTCAGCTGCAGCAATTAAGACCGGCCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGATTATTCTTCCCTTGGCACAAACAGTTGAGCACGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGAGCCACTACAGCGACGATAAACTCATGCCTGGTGACATCTTCCTCCTCCAACTTTGCAACGGTGTGGACGAGAATACGGTTGGTACTTCTGCTGAACTCATCTTTGCTCCGATTGACGCCTCTTTTTCCGATGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCTCTCGATTCTGGCATGGATGCTTCAAGTCCATACCGCACGCTTGATCTTGCTTCGGCTCTTGACGTTGGACCTGCTGGGAATAGAGCTTCTGGAGACTGTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTGCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGGAGCATTATAGCGTCTGTTCAGAGGGTGGCGCTGGCTCTATCGCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCGGCTGGTGCTCCTGAAGCACAAACACTTGCTCTTTGGATCTCTCAAAGCTATAGGTGCTTTATGGGCATGGAATTACTGAAAAATGAAGGACGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGCAGGCCTTGCCAAATTTCACATTCGCCAATCAATCTGGACTCGACATGCTCGAGACGACCTTGGTGGCTCTCCAAGACATTACTTTGGAGAAGATTTTTGATGATAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGGGGTATCTGCTTGTCAAGCATGGGAAGGGCAATATCCTACGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2529 46.62 MMAVTSACKDSATKISSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSDIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLSSGYLIRPCEGGGSIIHMVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRSLSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANMSYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQIILPLAQTVEHEEFMEVVKFENVSHYSDDKLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPYRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLALWISQSYRCFMGMELLKNEGRESVLKSLWHHSDAVMCCSLQALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFICLQGGICLSSMGRAISYEKAVAWKVLNEEENAHCICFMFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3058447 3063497 - CmoCh09G006130.1 Cmo09g00613 388615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00613 842 CDD START_ArGLABRA2_like 160 375 - -
Cmo09g00613 842 CDD homeodomain 22 82 IPR001356 GO:0003677
Cmo09g00613 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Cmo09g00613 842 SUPERFAMILY Bet v1-like 165 375 - -
Cmo09g00613 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 IPR044830 GO:0003700
Cmo09g00613 842 SMART HOX_1 19 85 IPR001356 GO:0003677
Cmo09g00613 842 Coils Coil 91 118 - -
Cmo09g00613 842 Gene3D - 200 376 IPR023393 -
Cmo09g00613 842 CDD bZIP 74 113 - -
Cmo09g00613 842 Gene3D - 15 88 - -
Cmo09g00613 842 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cmo09g00613 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Cmo09g00613 842 SMART START_1 165 375 IPR002913 GO:0008289
Cmo09g00613 842 Pfam START domain 166 374 IPR002913 GO:0008289
Cmo09g00613 842 Pfam MEKHLA domain 701 841 IPR013978 -
Cmo09g00613 842 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 842 - -
Cmo09g00613 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01491 Cmo09g00613 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00692 Cmo-Chr8:4405129 Cmo09g00613 Cmo-Chr9:3058447 0 dispersed
Cmo09g00613 Cmo-Chr9:3058447 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo01g01491 Cmo-Chr1:11533557 Cmo09g00613 Cmo-Chr9:3058447 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10360 PF01852 START 3.30E-53 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00613 K09338 - csv:101218438 1647.1