Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00615 ATGGAAGCTCCCCACTATTTCCACCCCGCTTTTTCCACCCAAAACCCACACTCCACCGATACACTTGAAACCACCACCACCGCGGCCGCCGCCGCCGCCGACCATTTCCTTGTCGAAGACCTTCTCGATTTCTCTAATGATGACCATGTCGTCTTCACCGACGCCACTTCCGACAACCAAACCCCCACCTCAACTGATTCCTCCGCTCTCACTTTACTTGAACAACCCAACAATGGACACCACAATTACAGCTTCCTCGACGCCAATTTCTCCACCGACCTTCCTGTTCCGTACGACGACTTAGCAGAGCTCGAATGGCTTTCCAATTTCGTTGAGGATTCTTTCTCCACCGACGACTTGGAGAAGCTGAGTCTGATATCAGGGGTGAATTCCCGGACCGACGACGACGACGCCGCCGCAAAACCCAGAGAATTTCAAACCGGACTCTCCGCCGGTTTCCACCCCGACATGTCGGTACCGGCGAAAGCCGCTCGTAGCAAGAGGTCTCGAGCATGTATATGGAATTCCAGAGTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGGCTAAGAAACCATCCAAGAAGAAAGAAACCCCCGACGACACGTTGTCCCCCAGCAATGGGGAAGGTCGGAAATGTCTCCATTGCGCCACCGACAAAACCCCTCAGTGGCGAACCGGCCCATTTGGCCCTAAAACCTTGTGTAACGCTTGTGGGGTTCGGTACAAATCCGGCCGCCTCGTACCGGAGTATCGACCAGCTGCAAGCCCGACATTCGTGCTGACAAAACACTCCAATTCTCACCGGAAAGTCATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAACAACAACAACATCATCATCATCATCAACAACAACATCATCAAGAGACTATGGAATTCAACCATGCATCCAACAACGACAACGACGATTACTTGATCCACCAACACATAGCACCCATCTACGAATAG 1005 52.34 MEAPHYFHPAFSTQNPHSTDTLETTTTAAAAAADHFLVEDLLDFSNDDHVVFTDATSDNQTPTSTDSSALTLLEQPNNGHHNYSFLDANFSTDLPVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDDDDAAAKPREFQTGLSAGFHPDMSVPAKAARSKRSRACIWNSRVSVLSPTNSSSETDVVVTLTAKKPSKKKETPDDTLSPSNGEGRKCLHCATDKTPQWRTGPFGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQHHHHHQQQHHQETMEFNHASNNDNDDYLIHQHIAPIYE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3073403 3074534 + CmoCh09G006150.1 Cmo09g00615 388617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00615 334 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 MobiDBLite consensus disorder prediction 199 220 - -
Cmo09g00615 334 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Cmo09g00615 334 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 PIRSF Txn_fac_GATA_plant 19 312 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo09g00615 334 Gene3D - 216 266 IPR013088 GO:0006355|GO:0008270
Cmo09g00615 334 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Cmo09g00615 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 280 - -
Cmo09g00615 334 MobiDBLite consensus disorder prediction 290 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00615 - - - csv:101221905 462.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00615 Cmo12g00198 CCT
Cmo05g00609 Cmo09g00615 CCT
Cmo05g00609 Cmo09g00615 ECH
Cmo09g00615 Cmo12g00198 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00730 Cmo-Chr3:6244604 Cmo09g00615 Cmo-Chr9:3073403 6.88E-40 dispersed
Cmo09g00615 Cmo-Chr9:3073403 Cmo17g00746 Cmo-Chr17:7377221 4.04E-75 dispersed
Cmo17g00123 Cmo-Chr17:701690 Cmo09g00615 Cmo-Chr9:3073403 2.41E-43 dispersed
Cmo12g00198 Cmo-Chr12:1292596 Cmo09g00615 Cmo-Chr9:3073403 1.67E-91 wgd
Cmo05g00609 Cmo-Chr5:3045969 Cmo09g00615 Cmo-Chr9:3073403 5.22E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10361 PF00320 GATA 2.00E-15 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00615 Cmo_Chr09 FPKM 3.39521 2.901398 9.415306 5.217892 107.827339 102.021851 100.546165 3.261648 2.716402 1.852718