Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00615 ATGGAAGCTCCCCACTATTTCCACCCCGCTTTTTCCACCCAAAACCCACACTCCACCGATACACTTGAAACCACCACCACCGCGGCCGCCGCCGCCGCCGACCATTTCCTTGTCGAAGACCTTCTCGATTTCTCTAATGATGACCATGTCGTCTTCACCGACGCCACTTCCGACAACCAAACCCCCACCTCAACTGATTCCTCCGCTCTCACTTTACTTGAACAACCCAACAATGGACACCACAATTACAGCTTCCTCGACGCCAATTTCTCCACCGACCTTCCTGTTCCGTACGACGACTTAGCAGAGCTCGAATGGCTTTCCAATTTCGTTGAGGATTCTTTCTCCACCGACGACTTGGAGAAGCTGAGTCTGATATCAGGGGTGAATTCCCGGACCGACGACGACGACGCCGCCGCAAAACCCAGAGAATTTCAAACCGGACTCTCCGCCGGTTTCCACCCCGACATGTCGGTACCGGCGAAAGCCGCTCGTAGCAAGAGGTCTCGAGCATGTATATGGAATTCCAGAGTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGGCTAAGAAACCATCCAAGAAGAAAGAAACCCCCGACGACACGTTGTCCCCCAGCAATGGGGAAGGTCGGAAATGTCTCCATTGCGCCACCGACAAAACCCCTCAGTGGCGAACCGGCCCATTTGGCCCTAAAACCTTGTGTAACGCTTGTGGGGTTCGGTACAAATCCGGCCGCCTCGTACCGGAGTATCGACCAGCTGCAAGCCCGACATTCGTGCTGACAAAACACTCCAATTCTCACCGGAAAGTCATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAACAACAACAACATCATCATCATCATCAACAACAACATCATCAAGAGACTATGGAATTCAACCATGCATCCAACAACGACAACGACGATTACTTGATCCACCAACACATAGCACCCATCTACGAATAG 1005 52.34 MEAPHYFHPAFSTQNPHSTDTLETTTTAAAAAADHFLVEDLLDFSNDDHVVFTDATSDNQTPTSTDSSALTLLEQPNNGHHNYSFLDANFSTDLPVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDDDDAAAKPREFQTGLSAGFHPDMSVPAKAARSKRSRACIWNSRVSVLSPTNSSSETDVVVTLTAKKPSKKKETPDDTLSPSNGEGRKCLHCATDKTPQWRTGPFGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQHHHHHQQQHHQETMEFNHASNNDNDDYLIHQHIAPIYE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3073403 3074534 + CmoCh09G006150.1 Cmo09g00615 388617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00615 334 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 MobiDBLite consensus disorder prediction 199 220 - -
Cmo09g00615 334 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Cmo09g00615 334 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 PIRSF Txn_fac_GATA_plant 19 312 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo09g00615 334 Gene3D - 216 266 IPR013088 GO:0006355|GO:0008270
Cmo09g00615 334 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Cmo09g00615 334 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Cmo09g00615 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 280 - -
Cmo09g00615 334 MobiDBLite consensus disorder prediction 290 321 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00615 Cmo12g00198 CCT
Cmo05g00609 Cmo09g00615 CCT
Cmo05g00609 Cmo09g00615 ECH
Cmo09g00615 Cmo12g00198 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00730 Cmo-Chr3:6244604 Cmo09g00615 Cmo-Chr9:3073403 6.88E-40 dispersed
Cmo09g00615 Cmo-Chr9:3073403 Cmo17g00746 Cmo-Chr17:7377221 4.04E-75 dispersed
Cmo17g00123 Cmo-Chr17:701690 Cmo09g00615 Cmo-Chr9:3073403 2.41E-43 dispersed
Cmo12g00198 Cmo-Chr12:1292596 Cmo09g00615 Cmo-Chr9:3073403 1.67E-91 wgd
Cmo05g00609 Cmo-Chr5:3045969 Cmo09g00615 Cmo-Chr9:3073403 5.22E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10361 PF00320 GATA 2.00E-15 CL0167 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00615 - - csv:101221905 462.996