Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00617 ATGAGGCTCGCTTGTTGCCTCAGGAGCTCACTGAAGGAACAAGTGGTCATGGTCATCTCTCTTAACTCAGACAGTGAAATGAGTTCATGTTTGGCTAGATGTTCATCAACTCGGCTGGAGAACATAGATGAAAATAGCCCTGCAAATTGGTTGCCGGGTTCGTTTGTTCTACCTGAAACTCCAATTGAGTCCATGGAATTTCTTGGCAGATCTTGGAGCCTGTCTGCCAAAGAGCTCTCTAAGGCTCTTTCCACTGCCCATGATACTCCTAGTCGTCTTCAGAACTCAGTGATTGGCTTTCTTAGTGCTGATGCACATGATTCAAATTCTTCAGATCAAAAGGAGAGGAAGAAGCAGGAAATCAGATCACAGAATGCTCAATTACATGCAGCTGTGTCTGTAGCAGGTGTTGCTGCTTCAGTAGCAGCATTCATTGCATCACTCTTATCTTGTGAAACATCATCGGGTAATCACAAATGGCCTTCAAAGACATCATCAGCCATGGCTTCTGCAGCTGCCCTTGTCGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCTAGCCATGAACATATCTTGAATGTAGTTAACTCTGCAATCAATGCTAGAACTAATGGAGATATCATGACCCTAACAGCAGGAGCAGCTACAGCTTTAAGAGGAGCTGCAACCTTAAGGTCAAGGCTTGAAAAAGGGTTGGGAGGCACAAACTTTGGAGTGGGTGAGGATAAAGTTGAAGAAGAAGGGAAAGAATCAAACATGTTGATAGCAATCAACCATGTTTCCAGGGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGCGTAATCTCGGGTGTGAACTGCAACGTTACGGCATGGCCGGGGCGGGAAAGGGAGACGGATAGCGAGCCAAGGGCTTACTTTGGCATTGTAACAACAGATAGAACAATAGAATTTGAATGCAGTGGGAAAGGAGAAAAACAGATAAAGAGTGATGGAGTTGTTGCGGTGGAGAACACCTTCCACGACCCATTTCCCAATCGATTCACCAAACACTTCCCTCGCCCCAACGCCCCCACAACGCCCCCAACGCCTATCACAATGTCAGCAACACAACCATCGCAAATCACCCAACCATCCTCCTCTGACACCAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGAACCTTCCCCACCCCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATACTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGCTGCCTAGTCTCACCACCAATTACCTTAATAACGAGTTCGTCCTCATGGACTCCACCGATGGCTGGGTTTACCCGCCCCCGTGGTTACGAACCATGGACGATTCCAGCTACAACAACAATAACAACAACAACATTATCGACGAAATGGGAATCGGAGACAGTAATTTCTTATGGGATTATTAA 1680 49.23 MRLACCLRSSLKEQVVMVISLNSDSEMSSCLARCSSTRLENIDENSPANWLPGSFVLPETPIESMEFLGRSWSLSAKELSKALSTAHDTPSRLQNSVIGFLSADAHDSNSSDQKERKKQEIRSQNAQLHAAVSVAGVAASVAAFIASLLSCETSSGNHKWPSKTSSAMASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRSRLEKGLGGTNFGVGEDKVEEEGKESNMLIAINHVSRGGELLKRTRKGVISGVNCNVTAWPGRERETDSEPRAYFGIVTTDRTIEFECSGKGEKQIKSDGVVAVENTFHDPFPNRFTKHFPRPNAPTTPPTPITMSATQPSQITQPSSSDTNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLTTNYLNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNNNNIIDEMGIGDSNFLWDY 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3084770 3091533 - CmoCh09G006170.1 Cmo09g00617 388619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00617 559 SMART rav1_2 397 460 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 MobiDBLite consensus disorder prediction 358 387 - -
Cmo09g00617 559 Pfam AP2 domain 396 446 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 Pfam Auxin canalisation 58 89 IPR008546 -
Cmo09g00617 559 Pfam Auxin canalisation 111 234 IPR008546 -
Cmo09g00617 559 PRINTS Ethylene responsive element binding protein signature 420 436 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 PRINTS Ethylene responsive element binding protein signature 398 409 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 ProSiteProfiles AP2/ERF domain profile. 397 454 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 MobiDBLite consensus disorder prediction 104 123 - -
Cmo09g00617 559 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 276 329 - -
Cmo09g00617 559 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 112 277 - -
Cmo09g00617 559 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 32 91 - -
Cmo09g00617 559 PANTHER EXPRESSED PROTEIN 276 329 IPR040269 -
Cmo09g00617 559 PANTHER EXPRESSED PROTEIN 112 277 IPR040269 -
Cmo09g00617 559 Coils Coil 111 131 - -
Cmo09g00617 559 Gene3D AP2/ERF domain 397 455 IPR036955 GO:0003700|GO:0006355
Cmo09g00617 559 SUPERFAMILY DNA-binding domain 397 455 IPR016177 GO:0003677
Cmo09g00617 559 MobiDBLite consensus disorder prediction 108 123 - -
Cmo09g00617 559 MobiDBLite consensus disorder prediction 339 396 - -
Cmo09g00617 559 PANTHER EXPRESSED PROTEIN 32 91 IPR040269 -
Cmo09g00617 559 CDD AP2 396 456 IPR001471 GO:0003700|GO:0006355
Cmo09g00617 559 Pfam Plant pleckstrin homology-like region 266 328 IPR013666 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01483 Cmo09g00617 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00102 Cmo-Chr1:461579 Cmo09g00617 Cmo-Chr9:3084770 6.86E-46 dispersed
Cmo08g00686 Cmo-Chr8:4379264 Cmo09g00617 Cmo-Chr9:3084770 9.14E-51 dispersed
Cmo09g00617 Cmo-Chr9:3084770 Cmo10g00689 Cmo-Chr10:3142161 2.12E-58 dispersed
Cmo01g01487 Cmo-Chr1:11520959 Cmo09g00617 Cmo-Chr9:3084770 2.79E-85 transposed
Cmo01g01483 Cmo-Chr1:11508164 Cmo09g00617 Cmo-Chr9:3084770 2.93E-42 wgd
Cmo12g00206 Cmo-Chr12:1361052 Cmo09g00617 Cmo-Chr9:3084770 1.45E-64 wgd
Cmo05g00619 Cmo-Chr5:3104970 Cmo09g00617 Cmo-Chr9:3084770 3.32E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10362 PF05703 Auxin_canalis 7.30E-54 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00617 K09286 - cmax:111480268 302.367