Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00617 | ATGAGGCTCGCTTGTTGCCTCAGGAGCTCACTGAAGGAACAAGTGGTCATGGTCATCTCTCTTAACTCAGACAGTGAAATGAGTTCATGTTTGGCTAGATGTTCATCAACTCGGCTGGAGAACATAGATGAAAATAGCCCTGCAAATTGGTTGCCGGGTTCGTTTGTTCTACCTGAAACTCCAATTGAGTCCATGGAATTTCTTGGCAGATCTTGGAGCCTGTCTGCCAAAGAGCTCTCTAAGGCTCTTTCCACTGCCCATGATACTCCTAGTCGTCTTCAGAACTCAGTGATTGGCTTTCTTAGTGCTGATGCACATGATTCAAATTCTTCAGATCAAAAGGAGAGGAAGAAGCAGGAAATCAGATCACAGAATGCTCAATTACATGCAGCTGTGTCTGTAGCAGGTGTTGCTGCTTCAGTAGCAGCATTCATTGCATCACTCTTATCTTGTGAAACATCATCGGGTAATCACAAATGGCCTTCAAAGACATCATCAGCCATGGCTTCTGCAGCTGCCCTTGTCGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCTAGCCATGAACATATCTTGAATGTAGTTAACTCTGCAATCAATGCTAGAACTAATGGAGATATCATGACCCTAACAGCAGGAGCAGCTACAGCTTTAAGAGGAGCTGCAACCTTAAGGTCAAGGCTTGAAAAAGGGTTGGGAGGCACAAACTTTGGAGTGGGTGAGGATAAAGTTGAAGAAGAAGGGAAAGAATCAAACATGTTGATAGCAATCAACCATGTTTCCAGGGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGCGTAATCTCGGGTGTGAACTGCAACGTTACGGCATGGCCGGGGCGGGAAAGGGAGACGGATAGCGAGCCAAGGGCTTACTTTGGCATTGTAACAACAGATAGAACAATAGAATTTGAATGCAGTGGGAAAGGAGAAAAACAGATAAAGAGTGATGGAGTTGTTGCGGTGGAGAACACCTTCCACGACCCATTTCCCAATCGATTCACCAAACACTTCCCTCGCCCCAACGCCCCCACAACGCCCCCAACGCCTATCACAATGTCAGCAACACAACCATCGCAAATCACCCAACCATCCTCCTCTGACACCAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGAACCTTCCCCACCCCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATACTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGCTGCCTAGTCTCACCACCAATTACCTTAATAACGAGTTCGTCCTCATGGACTCCACCGATGGCTGGGTTTACCCGCCCCCGTGGTTACGAACCATGGACGATTCCAGCTACAACAACAATAACAACAACAACATTATCGACGAAATGGGAATCGGAGACAGTAATTTCTTATGGGATTATTAA | 1680 | 49.23 | MRLACCLRSSLKEQVVMVISLNSDSEMSSCLARCSSTRLENIDENSPANWLPGSFVLPETPIESMEFLGRSWSLSAKELSKALSTAHDTPSRLQNSVIGFLSADAHDSNSSDQKERKKQEIRSQNAQLHAAVSVAGVAASVAAFIASLLSCETSSGNHKWPSKTSSAMASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRSRLEKGLGGTNFGVGEDKVEEEGKESNMLIAINHVSRGGELLKRTRKGVISGVNCNVTAWPGRERETDSEPRAYFGIVTTDRTIEFECSGKGEKQIKSDGVVAVENTFHDPFPNRFTKHFPRPNAPTTPPTPITMSATQPSQITQPSSSDTNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLTTNYLNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNNNNIIDEMGIGDSNFLWDY | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3084770 | 3091533 | - | CmoCh09G006170.1 | Cmo09g00617 | 388619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00617 | 559 | SMART | rav1_2 | 397 | 460 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | MobiDBLite | consensus disorder prediction | 358 | 387 | - | - | |
Cmo09g00617 | 559 | Pfam | AP2 domain | 396 | 446 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | Pfam | Auxin canalisation | 58 | 89 | IPR008546 | - | |
Cmo09g00617 | 559 | Pfam | Auxin canalisation | 111 | 234 | IPR008546 | - | |
Cmo09g00617 | 559 | PRINTS | Ethylene responsive element binding protein signature | 420 | 436 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | PRINTS | Ethylene responsive element binding protein signature | 398 | 409 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | ProSiteProfiles | AP2/ERF domain profile. | 397 | 454 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | MobiDBLite | consensus disorder prediction | 104 | 123 | - | - | |
Cmo09g00617 | 559 | PANTHER | PHOSPHOINOSITIDE BINDING PROTEIN | 276 | 329 | - | - | |
Cmo09g00617 | 559 | PANTHER | PHOSPHOINOSITIDE BINDING PROTEIN | 112 | 277 | - | - | |
Cmo09g00617 | 559 | PANTHER | PHOSPHOINOSITIDE BINDING PROTEIN | 32 | 91 | - | - | |
Cmo09g00617 | 559 | PANTHER | EXPRESSED PROTEIN | 276 | 329 | IPR040269 | - | |
Cmo09g00617 | 559 | PANTHER | EXPRESSED PROTEIN | 112 | 277 | IPR040269 | - | |
Cmo09g00617 | 559 | Coils | Coil | 111 | 131 | - | - | |
Cmo09g00617 | 559 | Gene3D | AP2/ERF domain | 397 | 455 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | SUPERFAMILY | DNA-binding domain | 397 | 455 | IPR016177 | GO:0003677 | |
Cmo09g00617 | 559 | MobiDBLite | consensus disorder prediction | 108 | 123 | - | - | |
Cmo09g00617 | 559 | MobiDBLite | consensus disorder prediction | 339 | 396 | - | - | |
Cmo09g00617 | 559 | PANTHER | EXPRESSED PROTEIN | 32 | 91 | IPR040269 | - | |
Cmo09g00617 | 559 | CDD | AP2 | 396 | 456 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00617 | 559 | Pfam | Plant pleckstrin homology-like region | 266 | 328 | IPR013666 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01483 | Cmo09g00617 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00102 | Cmo-Chr1:461579 | Cmo09g00617 | Cmo-Chr9:3084770 | 6.86E-46 | dispersed | |
Cmo08g00686 | Cmo-Chr8:4379264 | Cmo09g00617 | Cmo-Chr9:3084770 | 9.14E-51 | dispersed | |
Cmo09g00617 | Cmo-Chr9:3084770 | Cmo10g00689 | Cmo-Chr10:3142161 | 2.12E-58 | dispersed | |
Cmo01g01487 | Cmo-Chr1:11520959 | Cmo09g00617 | Cmo-Chr9:3084770 | 2.79E-85 | transposed | |
Cmo01g01483 | Cmo-Chr1:11508164 | Cmo09g00617 | Cmo-Chr9:3084770 | 2.93E-42 | wgd | |
Cmo12g00206 | Cmo-Chr12:1361052 | Cmo09g00617 | Cmo-Chr9:3084770 | 1.45E-64 | wgd | |
Cmo05g00619 | Cmo-Chr5:3104970 | Cmo09g00617 | Cmo-Chr9:3084770 | 3.32E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10362 | PF05703 | Auxin_canalis | 7.30E-54 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00617 | K09286 | - | cmax:111480268 | 302.367 |