Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00639 ATGGTAACTGCCATGGATTTCTACAATGAAGGACCTCAAACAGACCACTTTGGTGGTGAACTAATGGAAGCAATTTTACCTTTTATGAAAGTTGCTTCCTCTCTCTCTACAAATCTTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATCACCAGCACCATATCTCCCTCCTTGTACCAACAACCACCTCAGCTTCTCTCACTCTGCCCCTCAACAGTCCACTTTGTACTCAAATGGCTGCTCCACTTCGATGAACCCAGAATTTTCAAATGGGTTCTCGACCCAAAACCTCGTTGGTTTTGAACAGCCATTCACAATTGGACCCTATCAGTTATCATTACCTCAAAACCTTCAATCCCAACCTCAAGTCAATCTTCTTCAAAACCAAACCCCACTACCTTTTGCTTTGGAGCAACAAAACCATCAACCGCTACCCTGCTATGAACAAATAACGCCCAACTTCCTCAGCCCCAAGCCGACCCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTACAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCCGAGATCCGACTCCCAAGGAACAGAACTCGGCTCTGGCTCGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGATAAGGCAGCCTTCAAGCTTCGAGGTGACTCTGCCAGACTTAATTTCCCCCACCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTATAACCCTCTACATTCCTCAGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCCTTGCAGACACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCGCGGGCTGTGACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCAGATCTTTCATTTCCTGACTTCACAGAGATGCCATGGGATCAGAATCTAGCTTGGGAGACCTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCAATCTTACCTCAATAA 1098 47.09 MVTAMDFYNEGPQTDHFGGELMEAILPFMKVASSLSTNLPSSSSSSSSSSSSSSSLSPAPYLPPCTNNHLSFSHSAPQQSTLYSNGCSTSMNPEFSNGFSTQNLVGFEQPFTIGPYQLSLPQNLQSQPQVNLLQNQTPLPFALEQQNHQPLPCYEQITPNFLSPKPTPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCVEGEFGEYNPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSLADTAAVKVENSSSRAVTESDGSAASSPLSDLSFPDFTEMPWDQNLAWETSMLEKYPSEIDWASILPQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3198397 3199494 + CmoCh09G006390.1 Cmo09g00639 388641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00639 365 SUPERFAMILY DNA-binding domain 181 239 IPR016177 GO:0003677
Cmo09g00639 365 Pfam AP2 domain 182 230 IPR001471 GO:0003700|GO:0006355
Cmo09g00639 365 Gene3D AP2/ERF domain 181 239 IPR036955 GO:0003700|GO:0006355
Cmo09g00639 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 362 - -
Cmo09g00639 365 ProSiteProfiles AP2/ERF domain profile. 181 238 IPR001471 GO:0003700|GO:0006355
Cmo09g00639 365 MobiDBLite consensus disorder prediction 39 59 - -
Cmo09g00639 365 SMART rav1_2 181 244 IPR001471 GO:0003700|GO:0006355
Cmo09g00639 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 362 - -
Cmo09g00639 365 MobiDBLite consensus disorder prediction 307 327 - -
Cmo09g00639 365 CDD AP2 180 240 IPR001471 GO:0003700|GO:0006355
Cmo09g00639 365 PRINTS Ethylene responsive element binding protein signature 182 193 IPR001471 GO:0003700|GO:0006355
Cmo09g00639 365 PRINTS Ethylene responsive element binding protein signature 204 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00836 Cmo-Chr3:6662075 Cmo09g00639 Cmo-Chr9:3198397 4.51E-78 dispersed
Cmo04g00740 Cmo-Chr4:3690066 Cmo09g00639 Cmo-Chr9:3198397 1.73E-41 dispersed
Cmo05g00511 Cmo-Chr5:2474547 Cmo09g00639 Cmo-Chr9:3198397 1.11E-103 dispersed
Cmo07g00539 Cmo-Chr7:2427365 Cmo09g00639 Cmo-Chr9:3198397 2.51E-71 dispersed
Cmo09g00639 Cmo-Chr9:3198397 Cmo19g01017 Cmo-Chr19:8961976 3.19E-33 dispersed
Cmo10g00812 Cmo-Chr10:3785309 Cmo09g00639 Cmo-Chr9:3198397 1.33E-22 dispersed
Cmo11g00765 Cmo-Chr11:3726125 Cmo09g00639 Cmo-Chr9:3198397 3.37E-21 dispersed
Cmo15g01346 Cmo-Chr15:9210569 Cmo09g00639 Cmo-Chr9:3198397 5.19E-35 dispersed
Cmo01g01463 Cmo-Chr1:11389581 Cmo09g00639 Cmo-Chr9:3198397 4.78E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10363 PF00847 AP2 2.80E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00639 K09286 - csv:101214560 551.592