Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00642 ATGAATTTAGATGACATAGTTTTGAGGAATGTGATGTCTGTGGAAGAAGCAGAGCTGGTACATAATAATAATAATAATAATAATAATAACCCTTCCTCTTCACCTCCTGCCTCAGCAGCGGCCACGGCTTCGTTGTTTCTCGGGAAAAGGGCTGGCGATGTCGAGCCACAGCCCGATCTAATGACCGAGGTTTCAGCCTCGACAGAAGGGATGGAATGGATGCATTACCAACGAGCATTACTCATTGATTCCAAGTTGCCAGCTTCTCAAGCTGTTTACAATAATCATGGGAGTGTACCAGATATTGGTGTTTACAATTTGCAGGCTATGTCGATCACGACATCTGCCTCGTCGAACTCCGATTTCCATGAGGGTAATTCTGGACGGAAACGAAGACAATTGGATGATATAAAGGAGAAAACTATTGAAAGAAGGCAGAGGAGAATGATCAAGAACCGTGAGTCTGCTGCAAGGTCCAGAGCCAGGAAACAGGCTTATACGAATCAGTTGGAGCATGAGGTGTTATGCTTGAGGAAAACGAATAGTTGGCTGAGAAAGCAAGAGGAAGTAGAAAGAATGTTCTTGTCAAATCCAATTCCAATGCCCAGATATCAACTGCGGCGCACAAGCTCAGCCTTCTTCTAG 645 44.5 MNLDDIVLRNVMSVEEAELVHNNNNNNNNNPSSSPPASAAATASLFLGKRAGDVEPQPDLMTEVSASTEGMEWMHYQRALLIDSKLPASQAVYNNHGSVPDIGVYNLQAMSITTSASSNSDFHEGNSGRKRRQLDDIKEKTIERRQRRMIKNRESAARSRARKQAYTNQLEHEVLCLRKTNSWLRKQEEVERMFLSNPIPMPRYQLRRTSSAFF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3211492 3212324 - CmoCh09G006420.1 Cmo09g00642 388644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00642 214 SMART brlzneu 140 208 IPR004827 GO:0003700|GO:0006355
Cmo09g00642 214 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2-RELATED 67 212 - -
Cmo09g00642 214 MobiDBLite consensus disorder prediction 21 40 - -
Cmo09g00642 214 Pfam bZIP transcription factor 144 187 IPR004827 GO:0003700|GO:0006355
Cmo09g00642 214 SUPERFAMILY Leucine zipper domain 144 189 IPR046347 GO:0003700|GO:0006355
Cmo09g00642 214 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 147 162 IPR004827 GO:0003700|GO:0006355
Cmo09g00642 214 CDD bZIP_plant_BZIP46 144 189 - -
Cmo09g00642 214 Gene3D - 142 195 - -
Cmo09g00642 214 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 67 212 IPR043452 GO:0003700|GO:0045893
Cmo09g00642 214 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 187 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00642 K14432 ABF; ABA responsive element binding factor - csv:101212875 315.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00642 Cmo-Chr9:3211492 Cmo15g00552 Cmo-Chr15:2641308 5.59E-20 dispersed
Cmo09g00642 Cmo-Chr9:3211492 Cmo04g02610 Cmo-Chr4:19022595 1.18E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g347 . Blo12g00693 . . . Bpe04g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00642 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013832 0 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10364 PF00170 bZIP_1 3.00E-11 CL0018 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00642 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0