Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00648 ATGGCTACCTCTGTCCACAATCGTCAGTTTCCCCATTTGGATTCCGCCATTCGTGGCTGTAATTTTCCCTCCAATCCGGAGTTCTCCAAACCCAAGAAGACGGCGGCAATGGAGAACACCGGCGATGATGACTTCTCCAGTGATGACGACAACGATTCCGATTTCAACGACTTGATTCGAAAAGGGTTGAGCGAATTGGAGCCGTCGATTCACGATCCGAGAGATTCCGGCACGGCGGATGGTTGGATTGAGAGAAATGCGTCCATGGTTCGTCTTACGGGTAAACATCCTTTCAATTCGGAGCCGCCGTTACCCCGTTTGATGCACCATGGGTTCATCACTCCGGTTCCGCTTCATTACATCCGTAACCACGGCCCGGTGCCGAAGGCGAATTGGAACGATTGGACCGTCGAGATTTGCGGTTTAGTGAAAAAACCAACCCGGTTCACTATGGACCAACTCGTTAACGATTTCCGTAGCCGGGAATTTCCCGTCACACTCGTCTGCGCCGGTAACCGCCGGAAGGAACAGAATATGGTTAAGAAAACCATCGGATTCAACTGGGGCGGCGGCGGGATCTCCACGTCGGTCTGGCGAGGGGTCCCACTCCGAGACGTGTTAAAGCACTGTGGAATCTTCAGCAGTAAGAAAGGGGCCCTCAATGTCTGCTTTGAAGGAGCAGAGTGTTTGCCCGGCGGCGGTGGGTCCAAGTACGGCACTAGCCTGAGAAAGGAAGTAGCCATGGACCCAGGTAGAGATATAATGCTAGCGTATATGCAAAACGGCGATCTGTTAGCACCGGACCACGGATTTCCCGTTCGGGTCATCACGCCGGGATTCATCGGCGGCCGGATGGTCAAATGGCTAAAACGCATTATCGTAACCACAAAAGAATCAGATAGCTATTACCATTACAGAGACAACAAAGTCCTCCCCTCCCATGTCGATGCAGAATTGGCAAACGCCGAAGCTTGGTGGTACAAGCCGGAGTGTATTATCAGCGAACTGAACATAAACTCTGTTATAACCACACCATGCCACGAGGAAATCCTGCCAATAAACTCATGGACTACACAACGGCCGTATACATTAAGAGGATATGCATATTCCGGAGGGGGGAAGAAAGTGACACGAGTTGAGGTGACTCTCGACGGCGGAGAAACATGGCATCTCTCCGATTTGAACAGCCCGGAGAAGGCTACAAAATACGGGAAGTATTGGTGTTGGTGTTTCTGGTCGCTGGAGGTGGAGGTTCTTGACCTGCTTGCGGCGAAGGAAATTGCAGTCCGCGCTTGGGATGAGACGTTCAACACTCAGCCGGAGAAGCTCATATGGAATCTCATGGGAATGATGAACAATTGCTGGTTTCGAGTCAAAACCAATATGTGCAAGCCGCACAAGGGAGAGATCGGAATCGTTTTCGAACACCCAACGTTGCCGGGAAACCAGTCCGGCGGATGGATGGCTAAAGAGAGACACCTCGAGATATCCACCGAAAACAACCAAACCATGAAGAAGAGTATCTCATCGCCGTTCATCAACACCGCGTCAAACATATACTCAATGTCCGATGTCAAAACCCACAACTCCGACCAATCCGCTTGGATCGTCGTCCACGGCCATGTCTACGACTGCACCCGCTTCCTCAAGGATCATCCCGGCGGCACCGACAGCATTCTCATCAACGCCGGCACCGACTGTACGGAAGAATTCGACGCCATTCACTCCGACAAAGCGAAGAAAATGCTCGAGGATTACCGAATCGGCGAGTTGATCACTACCGGCTACGCTTCGGATTCGTCGCCTGACACCTCTGTTCATGGGCCAGTTAATCATAATATCCCCCATTTAGCTCCAATCACGGAGACGCGGCGCGTGGCTCTAATCCCGCGTGAGAAAATCCCCTGCAAATTGATTTCCAAAACGGCAATCTCCCACGACGTTAGACGGTTGAGATTCGCTCTGCCATTAGAGGATCAAGTGCTTGGATTACCGGTGGGTAAACACGTATTCCTCTGCGCAAACATTGACGGCAAGCTATGCATGAGAGCCTACACGCCCACCAGCGGCATCCACCAAGTGGGTTACTTCGAATTGGTTGTCAAAATCTACTTCAAAAACGCGCACCCCAAATTCCCCAACGGCGGGCTCATGTCGCAGCATTTGGACTCGCTCCCACTCGGATCCGAAGTCGAAGTGAAAGGCCCATTGGGGCACATCGAATACACCGGCCGCGGCCACTTTCTAGTCGACGGCAAGCCAAAGAAGGCCAAGAAGCTAGCTATGTTAGCCGGCGGAACGGGCATAACGCCGATTTATCAAGTGGCGCAGGCGATTTTGAAGGACCCAGAGGATGAAACGGAGATGTTCTTGGTGTATGCGAACCGAACGGAGAATGATATCTTGATGAGGGACGAGCTGGATGAATGGAGTAGGAGCGATAAGAGGTTCAATGTGTGGTATGTGGTGCAAGAGAGTGTACGAGAAGGGTGGGAGTATAGTGTCGGCGTGGTGTCGGAGAGTATCATGAGGGAGCATCTTCCGGCCGCATCGGCCGATTTGTTGGCGTTGGCTTGTGGACCGCCGCCGATGATTAAGTTCGCCGTGCAACCCAATTTGGAGAAGATGAATTACGACACCGCTGATTCGTTGTTGGTGTTTTGA 2664 52.03 MATSVHNRQFPHLDSAIRGCNFPSNPEFSKPKKTAAMENTGDDDFSSDDDNDSDFNDLIRKGLSELEPSIHDPRDSGTADGWIERNASMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYIRNHGPVPKANWNDWTVEICGLVKKPTRFTMDQLVNDFRSREFPVTLVCAGNRRKEQNMVKKTIGFNWGGGGISTSVWRGVPLRDVLKHCGIFSSKKGALNVCFEGAECLPGGGGSKYGTSLRKEVAMDPGRDIMLAYMQNGDLLAPDHGFPVRVITPGFIGGRMVKWLKRIIVTTKESDSYYHYRDNKVLPSHVDAELANAEAWWYKPECIISELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGETWHLSDLNSPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPHKGEIGIVFEHPTLPGNQSGGWMAKERHLEISTENNQTMKKSISSPFINTASNIYSMSDVKTHNSDQSAWIVVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYASDSSPDTSVHGPVNHNIPHLAPITETRRVALIPREKIPCKLISKTAISHDVRRLRFALPLEDQVLGLPVGKHVFLCANIDGKLCMRAYTPTSGIHQVGYFELVVKIYFKNAHPKFPNGGLMSQHLDSLPLGSEVEVKGPLGHIEYTGRGHFLVDGKPKKAKKLAMLAGGTGITPIYQVAQAILKDPEDETEMFLVYANRTENDILMRDELDEWSRSDKRFNVWYVVQESVREGWEYSVGVVSESIMREHLPAASADLLALACGPPPMIKFAVQPNLEKMNYDTADSLLVF 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3235211 3238354 + CmoCh09G006480.1 Cmo09g00648 388650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00648 887 Pfam Mo-co oxidoreductase dimerisation domain 332 461 IPR005066 GO:0016491|GO:0030151
Cmo09g00648 887 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 517 594 IPR036400 -
Cmo09g00648 887 Pfam Oxidoreductase FAD-binding domain 636 742 IPR008333 -
Cmo09g00648 887 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 730 880 IPR039261 -
Cmo09g00648 887 CDD cyt_b5_reduct_like 636 887 - -
Cmo09g00648 887 Gene3D - 76 325 IPR036374 -
Cmo09g00648 887 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 517 592 IPR001199 -
Cmo09g00648 887 Gene3D Translation factors 624 737 - -
Cmo09g00648 887 SMART Cyt_b5_2 520 592 IPR001199 -
Cmo09g00648 887 Pfam Cytochrome b5-like Heme/Steroid binding domain 522 591 IPR001199 -
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 90 104 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 112 128 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 165 176 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 176 188 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 191 206 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 249 265 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 266 279 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 282 295 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 333 345 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 364 378 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 378 390 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 405 415 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 430 442 IPR008335 GO:0016491
Cmo09g00648 887 PRINTS Eukaryotic molybdopterin domain signature 443 456 IPR008335 GO:0016491
Cmo09g00648 887 SUPERFAMILY E set domains 335 460 IPR014756 -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 662 673 - -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 683 690 - -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 728 742 - -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 761 780 - -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 799 810 - -
Cmo09g00648 887 PRINTS Cytochrome B5 reductase signature 855 863 - -
Cmo09g00648 887 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 72 333 IPR036374 -
Cmo09g00648 887 PANTHER NITRATE REDUCTASE 50 887 - -
Cmo09g00648 887 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 548 555 IPR018506 GO:0020037
Cmo09g00648 887 Gene3D - 513 593 IPR036400 -
Cmo09g00648 887 Pfam Oxidoreductase NAD-binding domain 762 869 IPR001433 GO:0016491
Cmo09g00648 887 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 631 743 IPR017927 GO:0016491
Cmo09g00648 887 Gene3D - 335 511 - -
Cmo09g00648 887 Gene3D - 738 887 IPR039261 -
Cmo09g00648 887 Pfam Oxidoreductase molybdopterin binding domain 124 303 IPR000572 -
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 551 561 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 683 690 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 761 780 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 787 796 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 799 810 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 831 847 IPR001709 GO:0016491
Cmo09g00648 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 855 863 IPR001709 GO:0016491
Cmo09g00648 887 PANTHER NADH-CYTOCHROME B5 REDUCTASE 50 887 IPR001834 GO:0016491
Cmo09g00648 887 CDD eukary_NR_Moco 75 460 - -
Cmo09g00648 887 PRINTS Cytochrome B5 signature 542 552 IPR001199 -
Cmo09g00648 887 PRINTS Cytochrome B5 signature 552 566 IPR001199 -
Cmo09g00648 887 PRINTS Cytochrome B5 signature 567 574 IPR001199 -
Cmo09g00648 887 PRINTS Cytochrome B5 signature 579 591 IPR001199 -
Cmo09g00648 887 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 141 176 IPR022407 GO:0043546
Cmo09g00648 887 MobiDBLite consensus disorder prediction 15 57 - -
Cmo09g00648 887 PIRSF Nitr_rd_NADH 10 886 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cmo09g00648 887 SUPERFAMILY Riboflavin synthase domain-like 623 743 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00648 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 1548.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00648 Cmo15g00727 CCT
Cmo04g02441 Cmo09g00648 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00648 Cmo-Chr9:3235211 Cmo15g00729 Cmo-Chr15:3567136 0 dispersed
Cmo20g00011 Cmo-Chr20:114784 Cmo09g00648 Cmo-Chr9:3235211 1.38E-38 dispersed
Cmo09g00648 Cmo-Chr9:3235211 Cmo15g00726 Cmo-Chr15:3541728 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00648 Cmo_Chr09 FPKM 10.809565 11.597866 5.512731 5.695357 4.445453 4.375882 4.822205 2.413354 2.989958 2.832653