Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00649 ATGGACTCTGTAAAATCTTCCGCTCTCACTCCAAATAAGAGTCGATTGGCATGCACCTTTACCAAAGTTCTTCATATTCGAGCTCTAACTGGGATAGCACCTGTTCATGGGACTCAGAAAGTTAAGCCGCAAGAAAAGATCAGTGATGATTGTACAGCAAGTAAGAGTACTGGGATAGCACCTGTGCACGGGACTCAGAAAGTTAAGCCGAAAGGAAAGATCAGCGATGATTGTACAGCAAGTAAGAGTACAGGTAGTCAATCTGAGTCTTTTGATAGTGTCGAAGAAGAGTTCCAGAATAGAGTCCAATTGCAAGTATTGGTAGCAAAATTGTTTGCTAGTATCTCATCAGTCAAAGCTGCATATTCTCAGTTACAGTATGCTCAATCCCCTTATGATGCCGAAGGTATTCAAGATGCTGATCACTATGTTATCTCAGAATTGAAAGTTTTGTCCGAATTGAAACAGTGTTACCTTAAAAAACTGTTTGATCCTTCACCAGAAACCACAATGCTCTTGGCTGAAATTCAGGAGCAAAAGAGTCTTGTGGGAACATATGACATAATGGGGAAAAGATTGGAATCCCAAACAAGACTTAAGGACTCCGAAATTATGTTTCTGAGAGAGAAGATCGACGAAATTAGAAAACAGAATAGGTTGCTTGAGAAAAGATTAAATCAAAGTGGGCCGATTTCTTTCACTGGTGATCTTCACTCATCAGGAGTAAACGTGAGGCATTTCATTAAAGTTCTTGGGCATACAATAAAGTCTGTTCGAAGTTTTGTCCGGATGATGGTGGATGAAATGAAATCTGCTGGTTGGGATGTTAATGCAGCTGCAACGGAATTCGAACCCGATGCTGTTTATTGGCATGATGATCATAGATGCTTTGCATTCGAGGCATTTGTTTTCAGGGAAATGTTCGACTCCTTCCATAAACTCAATTTTTCTCTCCCAAATGAATCCTTGCCAGAAAAAAGGAAACAGAAGCAATTTTTCTTTGCAAGATTCATGGAGCTGAAGCTAAGGAAAACAAAAGATTTTCTTTCACAAAATTCTAGGACAGCCTTTGCCAAATTTTGTCGGGTTAAGTATTTGCGACTAGTTCATCCCAAAATGGAATCATCATTATTTGGTAATTTGGACCAGAGAAGCCTAATCAGCTCCGGTCAATTCCCAGATACAACTTTCTTTGGTACATTTGCAGAGATGGCAAGGTGGGTGTGGCTCCTACATTCGTTAGCTTACTCCATTGAACCGGAGGCTTCCATTTTTCAAATAAAGAAAGGAAGCCGATTCTCAGACGTCTACATGGAAAGCGTAATTGATGAAATGTTCCTTTCACCAGATTCTGACCCATTTGTAGCATTCACTGTCGTTCCTGGGTTCATGATTGGTAAAACTGCAATCCAGTGCCGAGTCTATCTCTCACAATGA 1437 40.36 MDSVKSSALTPNKSRLACTFTKVLHIRALTGIAPVHGTQKVKPQEKISDDCTASKSTGIAPVHGTQKVKPKGKISDDCTASKSTGSQSESFDSVEEEFQNRVQLQVLVAKLFASISSVKAAYSQLQYAQSPYDAEGIQDADHYVISELKVLSELKQCYLKKLFDPSPETTMLLAEIQEQKSLVGTYDIMGKRLESQTRLKDSEIMFLREKIDEIRKQNRLLEKRLNQSGPISFTGDLHSSGVNVRHFIKVLGHTIKSVRSFVRMMVDEMKSAGWDVNAAATEFEPDAVYWHDDHRCFAFEAFVFREMFDSFHKLNFSLPNESLPEKRKQKQFFFARFMELKLRKTKDFLSQNSRTAFAKFCRVKYLRLVHPKMESSLFGNLDQRSLISSGQFPDTTFFGTFAEMARWVWLLHSLAYSIEPEASIFQIKKGSRFSDVYMESVIDEMFLSPDSDPFVAFTVVPGFMIGKTAIQCRVYLSQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3243929 3245365 + CmoCh09G006490.1 Cmo09g00649 388651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00649 478 MobiDBLite consensus disorder prediction 52 92 - -
Cmo09g00649 478 Coils Coil 204 224 - -
Cmo09g00649 478 MobiDBLite consensus disorder prediction 77 92 - -
Cmo09g00649 478 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 476 IPR040225 GO:0009639|GO:0009959
Cmo09g00649 478 Pfam Plant protein of unknown function (DUF641) 102 224 IPR006943 -
Cmo09g00649 478 PANTHER OS01G0203800 PROTEIN 1 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00649 - - - cmax:111476772 916.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00715 Cmo09g00649 CCT
Cmo04g00715 Cmo09g00649 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00774 Cmo-Chr6:4024868 Cmo09g00649 Cmo-Chr9:3243929 1.06E-09 dispersed
Cmo06g01173 Cmo-Chr6:8975778 Cmo09g00649 Cmo-Chr9:3243929 2.94E-104 dispersed
Cmo07g00165 Cmo-Chr7:875805 Cmo09g00649 Cmo-Chr9:3243929 1.50E-135 dispersed
Cmo09g00649 Cmo-Chr9:3243929 Cmo14g02029 Cmo-Chr14:14851499 2.02E-98 dispersed
Cmo16g01086 Cmo-Chr16:7685711 Cmo09g00649 Cmo-Chr9:3243929 1.62E-09 dispersed
Cmo04g00715 Cmo-Chr4:3555493 Cmo09g00649 Cmo-Chr9:3243929 0 transposed
Cmo01g01310 Cmo-Chr1:10391881 Cmo09g00649 Cmo-Chr9:3243929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g94 . . . . Bpe09g00262 . . Bma13g00926 . Cmo04g00715 . . . Car09g00591 . Cpe06g00521 . . . . . . . . Cla11g01701 Cam11g1767 Cec11g1787 Cco11g1792 Clacu11g1926 Cmu11g1737 Cre11g2145 Cone6ag0199 Cone9ag0229 . . . Csa04g02272 Chy07g00013 . . Blo10g00729 . Bda12g00816 . . . . . . Cmo09g00649 Cma04g00669 . . . . Cpe01g00603 . . . . . . . . . . . . . . . Csa04g00812 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003427 2 3 2 2 2 0 2 1 0 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 5 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00649 Cmo_Chr09 FPKM 9.093081 12.057087 8.738309 13.978599 49.68029 40.432468 50.948246 0.986994 0.422208 0.401