Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00656 ATGGATTTAACGACACTTCGTGTTCGTGTTCGTGTTCTTGTTCTTGTTCTTGGGTTGCTGTTTTTCAACTTGTTCTTCGGATTTGGATGCCATGCGCAGCCTCTGCCTGAACCTGAAGTGAGTTCCCTTCGAGCCATATCCGCACAGCTGAAGATCTTAAAGTGGAAAGTTGACCAAAATTCTTGCAACGACCCTAATAGTAGTTTCGTTAGCGAGGTGAGCTGCACTTGCTCCGTTGATTCTTGCAGTGTCTACTCCATCCGGATAAAGCGTCAGAACTTACGAGGGCATCTTCCCGCGGCATTTGCAAATCTGAGTGGCCTCACAGTCTTAGATCTCACTGGAAATTTCATATCCGGACCAATCCCTGCGGACTTTGGTCGCCTTCCTCTGCGTCATTTATCATTGTCGGGAAATCAACTGAGTGATCAGATTCCTCCAGAAATTGGTGATATTGCTTCACTCGAGGAACTGGTCTTGGAAAACAATCAGCTTGGAGGAATTCTTCCGGAAAGCCTCGGAAAATTGAGCCGTTTGCGAAGGCTACTTCTTTCTGCCAATTATTTCACAGGTCCCATTCCAGAATCTTATGGAAACTTGAGGAATTTGACTGATTTTTGGATAGATGGAAATGGTGTATCGGGAAAGCTTCCTGAATTTATTGGCAATTGGACCAACATTAAGAAATTATATATGCAAGGAACTTCTATGGAAACCCCTATTCCTGATGCCATATCCAAGTTAAAAAGCTTAGAGGAACTGGGGATAACCGATTTGAAGGGACTGCCAACAAGTTTTCCCGATTTGACTCAATTGACATCTTTACGCCGACTCTTCCTAAGAAATTGCTTAATCCACGATCGTATTCCTGACTATATGGGACAGTCGTTTAATAACTTAGAAATTTTAGATTTAAGCTGCAACAGACTAAGCGGTCCAATTCCAGAAACATTTGGAAAGCTAGTACACCAGTCAACTGAGTACATGTTTATGGGTAATAACTCGTTAAGCGGCCAAGTACCCGATTGGATTATGACCTCCGGAAGGAACATAGATTTATCTTACAACAATTTTACAAGGTCGTCTGTTCCCAACTATTGTCGGCAGTATGATGTGAACTTGGTGTCAAGTTACTCAACTATAAAGAATGGGAATCAAAAGCAAGAAGATGATTGGTGCCTGAGGAAAAATCTCCCTTGCCCTAAAGAAGCTCGATATGATTCATTATTCATTAATTGTGGAGGAAAAAGCATGAACTTTACTGGTAATGAATACGAAGGGGATACGATGGGTAACAGTGCGCAGTCCAGCTCCTTCGATTTTTCCAAAGGAAATTGGGGTTACAGCTCTACTGGTCTTTTCTTGGGAAATGAGGGACTTCCTTACACAGTCACAAACACCAGTCCCATTTCTGCTACGGGTGTCTATGAGACAGCTCGAGTTGCTCCTGTTTCCCTCAAATACTATGGATTTTGCTTGAGGAAAGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTATGTTTACTACTGCTCACCAAGACTTCAGCGAATCCGGAAGGCGCATATTTGATATCTCAATTCAAGGAAAACTGATTCAAACAGATTTTAACCTCACGATGAAAGCTGGAGGTGTTGGTAAGAGCTATATTTTGGAAGAGACTGATATTCAAGTCAACAAAGAAGGCACTTTAGAGATCCACTTATATTGGGCTGGTAAAGGAACAAATGCCATTCCTGAGAGAGGGGTGTTCGGACCTCTAATATCAGCCATTACAGTAACATCCGATGCAGACTCCAAGGATCCATCAACACCTTCCAAGCCTCCAATATCAGAAGCTGATCATGTTCCCCTTTCTGCCGGTGCAATCGTTGGAATTTTGGCTGCAGAAGCCTTCTTTATAATTTTGGTTCTTGGAATTTTATGGTGGAGAGGGTGTCTTGGATGGAAAATTACACGTCCAAAAGATTGGGAGGGTCTGAGTCTGCAAATTGGTTCGTTTACTTTAAAGCAAATCACAACTGCGACCAATAACTTTGACAGTTCCAATAAGATAGGGGAAGGTGGTTTTGGACCTGTTTACAAGGGTATTCTCCCGGATGGTACCGTGATTGCAGTGAAGAAACTTTCTTCAAAGTCAAATCAAGGAAAACGCGAATTTGTGAATGAGATAGGCACGATATCATCTTTGCAGCATCCATATCTAGTAAAGCTTTATGGATGTTGCACTGAAAGAGATCAGCTTTTGCTAGTATATGAATATGTGCAAAATAATAGCCTCGCTCGGGCCTTATTTGGTCCTAAGGAATGCCAGTTAGAATTGAATTGGCCAACAAGGCTACAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCGGGATTGAAGATTGTTCACCGAGACATCAAAGGAACCAATATATTGCTAGATGAAAATCTCACTCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAGAATACCCACATGACCACTCGGATTGCTGGAACATTTGGATACATGGCGCCAGAATATGCAACAAGAGGCCACCTAACTGATAAAGCAGATGTTTATAGTTTTGGTATTGTGGCATTAGAAATAGTTAGTGGAAGGAGCAACACCTTATATCGATCAAAGGAGAAGTGCCTTTATCTTCTCGATTGGGCACTTGTGGTGAAAGACCAAGGCAACTTATTGGAGCTGGTTGATCCAAGGTTGGGCTCCAATTTCGACCCAGGCGAGGCAATGGCTATGATCAACATTGCTCTCCTCTGCACCAATGTGTCTTTTTCGGCGAGACCAACCATGTCATCGGTGGTGAGCATGCTGGAAGGTAAGGCTGCAGTCGAGGAATTGACCACAAATCCAAATGACTTAAGAGAAGAGATCAACGCAATGTGGAGCCTTATGCAGCAGAACCATAAAATGATTGATAACGACTGCCACAGCAAGAATTCTAAAACTCCATTGGTTCAACAAGGAAACTCTTGGCTGCCGGAATCAACTATGATTAGACTGAAGAAGATGGTTTTTGGTCTCTGTTTACCAGGGAAATCAATCAACAAATTTAATGAAAATCACCATTACAACAAACCTTCAAACAGGACAAGATTCAAAAATTTGCTCATATCACGAGTTAATAACTTGGAAGAATTTGGAATCAAATTACAGATCAAATACTGA 3207 41.88 MDLTTLRVRVRVLVLVLGLLFFNLFFGFGCHAQPLPEPEVSSLRAISAQLKILKWKVDQNSCNDPNSSFVSEVSCTCSVDSCSVYSIRIKRQNLRGHLPAAFANLSGLTVLDLTGNFISGPIPADFGRLPLRHLSLSGNQLSDQIPPEIGDIASLEELVLENNQLGGILPESLGKLSRLRRLLLSANYFTGPIPESYGNLRNLTDFWIDGNGVSGKLPEFIGNWTNIKKLYMQGTSMETPIPDAISKLKSLEELGITDLKGLPTSFPDLTQLTSLRRLFLRNCLIHDRIPDYMGQSFNNLEILDLSCNRLSGPIPETFGKLVHQSTEYMFMGNNSLSGQVPDWIMTSGRNIDLSYNNFTRSSVPNYCRQYDVNLVSSYSTIKNGNQKQEDDWCLRKNLPCPKEARYDSLFINCGGKSMNFTGNEYEGDTMGNSAQSSSFDFSKGNWGYSSTGLFLGNEGLPYTVTNTSPISATGVYETARVAPVSLKYYGFCLRKGSYNVKLHFAEIMFTTAHQDFSESGRRIFDISIQGKLIQTDFNLTMKAGGVGKSYILEETDIQVNKEGTLEIHLYWAGKGTNAIPERGVFGPLISAITVTSDADSKDPSTPSKPPISEADHVPLSAGAIVGILAAEAFFIILVLGILWWRGCLGWKITRPKDWEGLSLQIGSFTLKQITTATNNFDSSNKIGEGGFGPVYKGILPDGTVIAVKKLSSKSNQGKREFVNEIGTISSLQHPYLVKLYGCCTERDQLLLVYEYVQNNSLARALFGPKECQLELNWPTRLQICIGIAKGLAFLHEESGLKIVHRDIKGTNILLDENLTPKISDFGLAKLDEEENTHMTTRIAGTFGYMAPEYATRGHLTDKADVYSFGIVALEIVSGRSNTLYRSKEKCLYLLDWALVVKDQGNLLELVDPRLGSNFDPGEAMAMINIALLCTNVSFSARPTMSSVVSMLEGKAAVEELTTNPNDLREEINAMWSLMQQNHKMIDNDCHSKNSKTPLVQQGNSWLPESTMIRLKKMVFGLCLPGKSINKFNENHHYNKPSNRTRFKNLLISRVNNLEEFGIKLQIKY 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3288325 3296648 + CmoCh09G006560.1 Cmo09g00656 388658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00656 1068 Gene3D Ribonuclease Inhibitor 38 259 IPR032675 -
Cmo09g00656 1068 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Cmo09g00656 1068 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Cmo09g00656 1068 PANTHER - 62 999 - -
Cmo09g00656 1068 SMART LRR_typ_2 297 320 IPR003591 -
Cmo09g00656 1068 SMART LRR_typ_2 272 296 IPR003591 -
Cmo09g00656 1068 SMART LRR_typ_2 105 129 IPR003591 -
Cmo09g00656 1068 SMART LRR_typ_2 152 175 IPR003591 -
Cmo09g00656 1068 SUPERFAMILY Protein kinase-like (PK-like) 662 952 IPR011009 -
Cmo09g00656 1068 Pfam Protein tyrosine and serine/threonine kinase 683 950 IPR001245 GO:0004672|GO:0006468
Cmo09g00656 1068 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 62 999 - -
Cmo09g00656 1068 SUPERFAMILY L domain-like 70 370 - -
Cmo09g00656 1068 Gene3D Ribonuclease Inhibitor 260 370 IPR032675 -
Cmo09g00656 1068 CDD STKc_IRAK 686 953 - -
Cmo09g00656 1068 Pfam Leucine rich repeat 84 141 IPR001611 GO:0005515
Cmo09g00656 1068 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Cmo09g00656 1068 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cmo09g00656 1068 ProSiteProfiles Protein kinase domain profile. 680 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00656 1068 Gene3D Phosphorylase Kinase; domain 1 652 755 - -
Cmo09g00656 1068 Pfam Malectin domain 409 592 IPR021720 -
Cmo09g00656 1068 SMART serkin_6 680 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00656 1068 Gene3D - 408 598 - -
Cmo09g00656 1068 Gene3D Transferase(Phosphotransferase) domain 1 756 974 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01316 Cmo-Chr1:10421966 Cmo09g00656 Cmo-Chr9:3288325 1.28E-08 dispersed
Cmo04g00711 Cmo-Chr4:3519505 Cmo09g00656 Cmo-Chr9:3288325 0 dispersed
Cmo09g00656 Cmo-Chr9:3288325 Cmo13g00605 Cmo-Chr13:6653499 0 dispersed
Cmo09g00655 Cmo-Chr9:3277220 Cmo09g00656 Cmo-Chr9:3288325 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74574 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00656 - - csv:101222014 1142.1