Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00663 | ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGCCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAACCAGGATCAATCTCTCCATTCCTCTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCATTATTCTTTCTTCCAGACGCTGATTCGCCTCACCCAGCCGCCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTTCCCCCCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAGGAAGAAGAATCGGTACCGAAAACAGAATCAGTGAGAGAGAAAAATGAAGAGGATGAAGAAAAGGAAATTTCTGATGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTCTGTGGGCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGCAGAGAAGGAATCGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCGAAATGTTACATCTGCAAAACTTCTAGCGGTTGTGCTATAGACTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACAGAGAAGGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGCAACAACTGACAGGAAAGTTCAAGATCGTGGCTCGAGATGAAGAAACTCGAAAATCAAAATCAAAATCAATCGGACAATCAAAAGTGATGGCGGAGAAGAACAACACATCAAGATTCGGAGGTTCGATTTTGGTACCTTCCGTTCAAGAGTTGGCGAAACAGCCGATCATCGAAGTTCCATCTCGATACATCCGCCCCGATCTCCACTCCTTCCCGATCGTCTCCGCCGCTTCCGAAATCCCCGTTATCGACATGTCGAACTTTCACTCCGACGCTTCAATGCACTCCGAATTGGCTCGGCTTCATTCCGCTTGCAAAAATTGGGGATTCTTTCAGTTGGTGAACCATGGAGTGAGCGATTCGTTAATCGAGAAAATGAAGGCGGAGACGCAGATGTTCTTCAATCTACCGATTGAAGAGAAGAAGAAAAGGCTATGGCAGAGTGAAGAAGATGCAGAAGGATTTGGACAAGCTTTCGTTGTAAGTGAAGAACAGAAACTGGATTGGTGCGACCTTTTCTTCATCGCTACCGCGCCTCCACATCTCAGGAAACCGCGCTTATTTCAAAACCTCCCTCTCGCTTTCCGAAACACAATGGAGGAGTACTCGGCAGAGGTGAAGAATCTGGCGATGGCGATTTTCGAGCAATTTGAGAAAGCGTTGGGGATCAAAGAAGGGGAGTTGACGGAGATCTTCAAGGATGGTAGTCAGTCGATGAGAATGAACTATTATCCTCCCTGCCCGGAGCCGGAGAAGGTGATCGGACTGACCCCGCATTCCGACGCCGTCGGCCTCACAATTCTGCTGCAAATCAACGAAATGGAAGGTCTGAAGATTAAGAAGGACGGGAATTGGGTTGCCGTGACGCCTCTCCCCAATGCGTTCATCGTCAACATTGGCGACATCATGGAGATAATAACAAATGGGGAATACAAAAGCATAGAACACTGCGCCACGGTGAACGCAAAGAGGGAAAGGCTGTCCATAGCGACCTTCAACAACCCAAGGTTGGAGAAAGAAATAAAGGCAATTCCATCCCTCATCACGCCTCACTCCCCTCCATTGTTTACAACTTTGACATACCAACAGTTCGTGAGGCTGCTCTTTTCTCGCAAACTAGACGGGAAGTCTCACCTCGACACCCTGCGCATTCACACTCCACCAACCTAA | 2109 | 47.98 | MDSLHGLPPLKSLRFLQEQQQLNPQNQDQSLHSSSLPAKKRKESRDSSLFFLPDADSPHPAAISASYCLPTKKRVWALHPDFPPESLDLNVEYKPPPEEEESVPKTESVREKNEEDEEKEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSSGCAIDCSEPKCNLAFHVTCGLKEDLCIEYREGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEETRKSKSKSIGQSKVMAEKNNTSRFGGSILVPSVQELAKQPIIEVPSRYIRPDLHSFPIVSAASEIPVIDMSNFHSDASMHSELARLHSACKNWGFFQLVNHGVSDSLIEKMKAETQMFFNLPIEEKKKRLWQSEEDAEGFGQAFVVSEEQKLDWCDLFFIATAPPHLRKPRLFQNLPLAFRNTMEEYSAEVKNLAMAIFEQFEKALGIKEGELTEIFKDGSQSMRMNYYPPCPEPEKVIGLTPHSDAVGLTILLQINEMEGLKIKKDGNWVAVTPLPNAFIVNIGDIMEIITNGEYKSIEHCATVNAKRERLSIATFNNPRLEKEIKAIPSLITPHSPPLFTTLTYQQFVRLLFSRKLDGKSHLDTLRIHTPPT | 702 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3323131 | 3328253 | + | CmoCh09G006630.1 | Cmo09g00663 | 388665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00663 | 702 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 196 | 308 | IPR034732 | - | |
Cmo09g00663 | 702 | PANTHER | OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE | 352 | 697 | - | - | |
Cmo09g00663 | 702 | Pfam | 2OG-Fe(II) oxygenase superfamily | 550 | 647 | IPR044861 | - | |
Cmo09g00663 | 702 | CDD | PHD_BRPF_JADE_like | 132 | 180 | - | - | |
Cmo09g00663 | 702 | SMART | PHD_3 | 132 | 181 | IPR001965 | - | |
Cmo09g00663 | 702 | SMART | PHD_3 | 253 | 308 | IPR001965 | - | |
Cmo09g00663 | 702 | MobiDBLite | consensus disorder prediction | 19 | 62 | - | - | |
Cmo09g00663 | 702 | MobiDBLite | consensus disorder prediction | 87 | 125 | - | - | |
Cmo09g00663 | 702 | PANTHER | 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE | 352 | 697 | - | - | |
Cmo09g00663 | 702 | Gene3D | - | 356 | 687 | IPR027443 | - | |
Cmo09g00663 | 702 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
Cmo09g00663 | 702 | SUPERFAMILY | Clavaminate synthase-like | 358 | 689 | - | - | |
Cmo09g00663 | 702 | CDD | ePHD | 199 | 307 | - | - | |
Cmo09g00663 | 702 | SUPERFAMILY | FYVE/PHD zinc finger | 111 | 181 | IPR011011 | - | |
Cmo09g00663 | 702 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
Cmo09g00663 | 702 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 194 | IPR013083 | - | |
Cmo09g00663 | 702 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - | |
Cmo09g00663 | 702 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 548 | 648 | IPR005123 | - | |
Cmo09g00663 | 702 | Pfam | PHD-finger | 133 | 181 | IPR019787 | - | |
Cmo09g00663 | 702 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 393 | 493 | IPR026992 | - | |
Cmo09g00663 | 702 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 310 | IPR013083 | - | |
Cmo09g00663 | 702 | ProSiteProfiles | Zinc finger PHD-type profile. | 130 | 183 | IPR019787 | - | |
Cmo09g00663 | 702 | Pfam | PHD-zinc-finger like domain | 198 | 294 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01329 | Cmo09g00663 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01356 | Cmo-Chr3:10016424 | Cmo09g00663 | Cmo-Chr9:3323131 | 4.92E-96 | dispersed | |
Cmo07g00145 | Cmo-Chr7:795755 | Cmo09g00663 | Cmo-Chr9:3323131 | 9.30E-112 | dispersed | |
Cmo09g00663 | Cmo-Chr9:3323131 | Cmo14g01667 | Cmo-Chr14:13140332 | 5.76E-81 | dispersed | |
Cmo01g01329 | Cmo-Chr1:10562944 | Cmo09g00663 | Cmo-Chr9:3323131 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10365 | PF14226 | DIOX_N | 2.30E-27 | CL0029 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00663 | - | - | csv:101203495 | 556.214 |