Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00663 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGCCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAACCAGGATCAATCTCTCCATTCCTCTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCATTATTCTTTCTTCCAGACGCTGATTCGCCTCACCCAGCCGCCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTTCCCCCCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAGGAAGAAGAATCGGTACCGAAAACAGAATCAGTGAGAGAGAAAAATGAAGAGGATGAAGAAAAGGAAATTTCTGATGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTCTGTGGGCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGCAGAGAAGGAATCGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCGAAATGTTACATCTGCAAAACTTCTAGCGGTTGTGCTATAGACTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACAGAGAAGGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGCAACAACTGACAGGAAAGTTCAAGATCGTGGCTCGAGATGAAGAAACTCGAAAATCAAAATCAAAATCAATCGGACAATCAAAAGTGATGGCGGAGAAGAACAACACATCAAGATTCGGAGGTTCGATTTTGGTACCTTCCGTTCAAGAGTTGGCGAAACAGCCGATCATCGAAGTTCCATCTCGATACATCCGCCCCGATCTCCACTCCTTCCCGATCGTCTCCGCCGCTTCCGAAATCCCCGTTATCGACATGTCGAACTTTCACTCCGACGCTTCAATGCACTCCGAATTGGCTCGGCTTCATTCCGCTTGCAAAAATTGGGGATTCTTTCAGTTGGTGAACCATGGAGTGAGCGATTCGTTAATCGAGAAAATGAAGGCGGAGACGCAGATGTTCTTCAATCTACCGATTGAAGAGAAGAAGAAAAGGCTATGGCAGAGTGAAGAAGATGCAGAAGGATTTGGACAAGCTTTCGTTGTAAGTGAAGAACAGAAACTGGATTGGTGCGACCTTTTCTTCATCGCTACCGCGCCTCCACATCTCAGGAAACCGCGCTTATTTCAAAACCTCCCTCTCGCTTTCCGAAACACAATGGAGGAGTACTCGGCAGAGGTGAAGAATCTGGCGATGGCGATTTTCGAGCAATTTGAGAAAGCGTTGGGGATCAAAGAAGGGGAGTTGACGGAGATCTTCAAGGATGGTAGTCAGTCGATGAGAATGAACTATTATCCTCCCTGCCCGGAGCCGGAGAAGGTGATCGGACTGACCCCGCATTCCGACGCCGTCGGCCTCACAATTCTGCTGCAAATCAACGAAATGGAAGGTCTGAAGATTAAGAAGGACGGGAATTGGGTTGCCGTGACGCCTCTCCCCAATGCGTTCATCGTCAACATTGGCGACATCATGGAGATAATAACAAATGGGGAATACAAAAGCATAGAACACTGCGCCACGGTGAACGCAAAGAGGGAAAGGCTGTCCATAGCGACCTTCAACAACCCAAGGTTGGAGAAAGAAATAAAGGCAATTCCATCCCTCATCACGCCTCACTCCCCTCCATTGTTTACAACTTTGACATACCAACAGTTCGTGAGGCTGCTCTTTTCTCGCAAACTAGACGGGAAGTCTCACCTCGACACCCTGCGCATTCACACTCCACCAACCTAA 2109 47.98 MDSLHGLPPLKSLRFLQEQQQLNPQNQDQSLHSSSLPAKKRKESRDSSLFFLPDADSPHPAAISASYCLPTKKRVWALHPDFPPESLDLNVEYKPPPEEEESVPKTESVREKNEEDEEKEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSSGCAIDCSEPKCNLAFHVTCGLKEDLCIEYREGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEETRKSKSKSIGQSKVMAEKNNTSRFGGSILVPSVQELAKQPIIEVPSRYIRPDLHSFPIVSAASEIPVIDMSNFHSDASMHSELARLHSACKNWGFFQLVNHGVSDSLIEKMKAETQMFFNLPIEEKKKRLWQSEEDAEGFGQAFVVSEEQKLDWCDLFFIATAPPHLRKPRLFQNLPLAFRNTMEEYSAEVKNLAMAIFEQFEKALGIKEGELTEIFKDGSQSMRMNYYPPCPEPEKVIGLTPHSDAVGLTILLQINEMEGLKIKKDGNWVAVTPLPNAFIVNIGDIMEIITNGEYKSIEHCATVNAKRERLSIATFNNPRLEKEIKAIPSLITPHSPPLFTTLTYQQFVRLLFSRKLDGKSHLDTLRIHTPPT 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3323131 3328253 + CmoCh09G006630.1 Cmo09g00663 388665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00663 702 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Cmo09g00663 702 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 352 697 - -
Cmo09g00663 702 Pfam 2OG-Fe(II) oxygenase superfamily 550 647 IPR044861 -
Cmo09g00663 702 CDD PHD_BRPF_JADE_like 132 180 - -
Cmo09g00663 702 SMART PHD_3 132 181 IPR001965 -
Cmo09g00663 702 SMART PHD_3 253 308 IPR001965 -
Cmo09g00663 702 MobiDBLite consensus disorder prediction 19 62 - -
Cmo09g00663 702 MobiDBLite consensus disorder prediction 87 125 - -
Cmo09g00663 702 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 352 697 - -
Cmo09g00663 702 Gene3D - 356 687 IPR027443 -
Cmo09g00663 702 MobiDBLite consensus disorder prediction 35 49 - -
Cmo09g00663 702 SUPERFAMILY Clavaminate synthase-like 358 689 - -
Cmo09g00663 702 CDD ePHD 199 307 - -
Cmo09g00663 702 SUPERFAMILY FYVE/PHD zinc finger 111 181 IPR011011 -
Cmo09g00663 702 MobiDBLite consensus disorder prediction 19 34 - -
Cmo09g00663 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 194 IPR013083 -
Cmo09g00663 702 MobiDBLite consensus disorder prediction 92 117 - -
Cmo09g00663 702 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 548 648 IPR005123 -
Cmo09g00663 702 Pfam PHD-finger 133 181 IPR019787 -
Cmo09g00663 702 Pfam non-haem dioxygenase in morphine synthesis N-terminal 393 493 IPR026992 -
Cmo09g00663 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 310 IPR013083 -
Cmo09g00663 702 ProSiteProfiles Zinc finger PHD-type profile. 130 183 IPR019787 -
Cmo09g00663 702 Pfam PHD-zinc-finger like domain 198 294 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01329 Cmo09g00663 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01356 Cmo-Chr3:10016424 Cmo09g00663 Cmo-Chr9:3323131 4.92E-96 dispersed
Cmo07g00145 Cmo-Chr7:795755 Cmo09g00663 Cmo-Chr9:3323131 9.30E-112 dispersed
Cmo09g00663 Cmo-Chr9:3323131 Cmo14g01667 Cmo-Chr14:13140332 5.76E-81 dispersed
Cmo01g01329 Cmo-Chr1:10562944 Cmo09g00663 Cmo-Chr9:3323131 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10365 PF14226 DIOX_N 2.30E-27 CL0029 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00663 - - csv:101203495 556.214