Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00683 ATGGAGGTTTCGATTATGATTCATGTGGGATTCGTCCTCTTTCTTCTCTGGCTACTTTCCGCCTTCAATTGCTGCCATCTTGCTGCATATTTCATCTCCCTCATCTATCTCTATCTGATTCTTTGGAATCTGGATAATTCTCTGAAGCTTCAGTTTCTTATGGGATTGAATCTTCCTCTTTTCCTTAATGAACTTCTAGTGCACGAGCGGTTCTTTTTGAAACTAAGGAGGAAATTGCAATTCGAGGAGAGAAAGCAAGCTAACCAGAGAAGGGTTCTTACGGATTCTGAAACAGTCAGGTGGTTAAACCATGCGGTTGAAAAGATTTGGCCTATATGCATGGAGCATATTGCTTCTCAGAAGATTCTCCTCCCTATCATTCCTTGGTTCTTGGAGAAGTACAAACCATGGACTGCTAAGAAGGCTGTGGTTCAGCATCTATATTTGGGGAGAAACCCACCTATGTTTACTGAAATGAGGGTGCTTCGTGAGCCTAGCGAGGACGACCACTTGGTTCTGGAGTTAGGAATGAACTTTCTTACAGCTGATGATATGAGTGCAATACTTGGTGTGAAGCTAAGGAAAAGACTAGGATTTGGAATGTGGGCAAAGTTGCATCTTACAGGCCTGCATGTGGAAGGAAAGGTTCTGGTTGGTGTCAAGTTCCTTCGGGATTGGCCCTACCTCGGCCGAATACGCTTATGTTTTGCTGAGCCTCCGTACTTTCAGATGACCGTCAAACCTATCTTTACGCATGGTCTTGATGTTACTGAACTTCCGGGGATTGCTGGATGGCTGGATAAGCTTTTGTCCATTGCCTTTGAGCAGACACTTGTTGAGCCCAATATGTTGGTTGTTGACATGGAGAAGTTCATTTCACCACAGCCAGAGTGCTTAAAAAAAGTTACAGCCTTGTGCTGCGATGAGGATACTTCGCGTAATTCTCCTTTTCTGAAATGGTTGAACGCTTTGATGCGGATGTCACGTGAAAATTGGTTCTCTGTAAACGTGAAGGAACCAGTCGCCTACGTCATAGTCGAAGTTGTTGAAGGAGCAAACATGAAACCATCTGATCTAAATGGTTCGGTGCTTCCAAGTCTGGCTGATCCCTATGTAAAGGGTCAACTGGGTCCTTACAGATTCAGAACCAAAATTCAAAGGAAAACACTGTCTCCACAGTGGCACGAGGAGTTCAAGATCCCAATTGTCACCTGGGAGTCAGAAAATGTGCTTGCTATTGAAGTCCGTGACAAGGACACATTTGTCGACGACATACTTGGAAATTGCTCTGTCAACATTGCGGACCTGAGGGATGGCAAACGACATGATATATGGTTGCCTCTCGAAAACATTAAAATGGGGCGATTGCATCTGGGAATCACTGTTTTTGAAGATAGAAAGAAGGTGGAGGAGTATCCATTTCAAAGAGAAACCTTGAATGTGGAAGAGCCTCATAAGGATTCCCCTGGGAGTGAGACTACCAAGGATGATAAGGATTCCCCTAGGAGCGAGACCAAGAACGGTAAGGATTCAAACTCATCAGTATCAGTGGAGCCTCGAAGAGGGATCGACAATTTTGAGCCCATCAACGTTGAAGGGCAGAAGGAGACAGGAATATGGGTCCACCGTCCAGGAAGCGAAGTTTCAAAAACTTGGGAGCCCCGGAAGGGACGAAGTCGGCAGCTTGATACCGAAATCCGTAGGGAGCCTAATGAATCTATGAGCAGTGGTGAGATAAAATCCTGTAACAATGATTCTAGCAGTACTGATGATAATCCTGAGGAAAAACATCGAAAGTTATCAGTTCGCAGGGGATTGAGAAAGCTGAGTTCAGTTTTTCACCGGAGTCCTCGGGATGAGGATCGATCAGGAAGCTTAGTAGAGTCTGCTAGATCCCCCCAGTACGCAAATGTCAGGGCGACAAATGTCGATGGAGGCGTCAAGGTTATTCTTGTAGATAACATTTCCGGGACTAGTTCGGATAAAGTATCAAAAGAAGGGAAGTCGAGCAACGATGGTAGCGATATAGAGAGTCCAGGAAAGGGTGGAAATGTGAAAGGCATGGCAAAGAGCATTTTCAGACAGGCTGAGAAATCTGCTCGCAGTATTAAATATGCATTTTCACGCAAAGGGTCAAGGAAATTCCAAATTGGTTCACAGAGAGATCCTGCAGTAGCATCAGAGTCTTCTGATGATGAACCTGACGCACCAGCTGCTTGCAGCCCAACGACAATTAGAGGAATTCCAGTTATCCCTGAAGACACAACCTTAGCTCCTCACAACAATTCCTTTAAGAAGGAAAATGTGGTGCCCACTGGTTCAAGTAACAGTGTGGAGTACAGTGATCAATCATCAGATAAGAGCACTGCAGCGCTTCGATCGGAAAAGATCGAAGACGACAAGGACAATAAACATGGAATCAATGGTGACAAATGA 2436 44.91 MEVSIMIHVGFVLFLLWLLSAFNCCHLAAYFISLIYLYLILWNLDNSLKLQFLMGLNLPLFLNELLVHERFFLKLRRKLQFEERKQANQRRVLTDSETVRWLNHAVEKIWPICMEHIASQKILLPIIPWFLEKYKPWTAKKAVVQHLYLGRNPPMFTEMRVLREPSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHLTGLHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDMEKFISPQPECLKKVTALCCDEDTSRNSPFLKWLNALMRMSRENWFSVNVKEPVAYVIVEVVEGANMKPSDLNGSVLPSLADPYVKGQLGPYRFRTKIQRKTLSPQWHEEFKIPIVTWESENVLAIEVRDKDTFVDDILGNCSVNIADLRDGKRHDIWLPLENIKMGRLHLGITVFEDRKKVEEYPFQRETLNVEEPHKDSPGSETTKDDKDSPRSETKNGKDSNSSVSVEPRRGIDNFEPINVEGQKETGIWVHRPGSEVSKTWEPRKGRSRQLDTEIRREPNESMSSGEIKSCNNDSSSTDDNPEEKHRKLSVRRGLRKLSSVFHRSPRDEDRSGSLVESARSPQYANVRATNVDGGVKVILVDNISGTSSDKVSKEGKSSNDGSDIESPGKGGNVKGMAKSIFRQAEKSARSIKYAFSRKGSRKFQIGSQRDPAVASESSDDEPDAPAACSPTTIRGIPVIPEDTTLAPHNNSFKKENVVPTGSSNSVEYSDQSSDKSTAALRSEKIEDDKDNKHGINGDK 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3387638 3392756 + CmoCh09G006830.1 Cmo09g00683 388685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00683 811 MobiDBLite consensus disorder prediction 612 626 - -
Cmo09g00683 811 ProSiteProfiles C2 domain profile. 327 446 IPR000008 -
Cmo09g00683 811 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 2 40 - -
Cmo09g00683 811 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 66 774 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 548 574 - -
Cmo09g00683 811 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 334 463 IPR035892 -
Cmo09g00683 811 SMART C2_3c 343 445 IPR000008 -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 789 811 - -
Cmo09g00683 811 CDD C2 344 448 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 756 788 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 654 693 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 474 639 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 474 506 - -
Cmo09g00683 811 MobiDBLite consensus disorder prediction 711 811 - -
Cmo09g00683 811 Gene3D C2 domain 324 464 IPR035892 -
Cmo09g00683 811 Pfam C2 domain 344 448 IPR000008 -
Cmo09g00683 811 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 289 IPR031468 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00683 - - - cmax:111477018 1424.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00683 Cmo-Chr9:3387638 Cmo09g00449 Cmo-Chr9:2012461 6.22E-14 dispersed
Cmo01g01336 Cmo-Chr1:10585960 Cmo09g00683 Cmo-Chr9:3387638 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00683 Cmo_Chr09 FPKM 2.683341 2.031908 49.088264 48.534344 5.462618 7.621254 5.083676 52.899731 58.131893 47.468468