Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00716 ATGTCAACTGTCGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCTGATGAAGGAATAGTTGTCCGAGAATTCTGTGCAAATGGGGTATGCATAAAAACTTCAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGGGAAGGATTATCTCTCAATTTAGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGCAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTCCATTGCTGAGAAGACTCCTCCAAAAAAAGGACGTTCACGCCCTGAATCTCAACAGGCAGTTTCCCAGCATGCTGCAAGCCTGGTGCTCGAAGCCATATATTTAAAAGTGAAATCTCTACAGAAGCTAGGGAGAGTAAATGAGGCTGCTGATGAGTGTACGAGTGTCCTTGATGCCGTAGAAAAGATATTCCAACAAGGAATTCCTGATGCGCAAGTGGATGGTAGATTGCAAGATACTATCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAGTATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAATAATGAAAGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTAATGCTTCTTGTGAAGAAATGTTACCTTTGTAAGATAAAGTGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCACATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCCGGACAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTGTCTACACAAACATGAAAAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGGTCTGTAGTGAGGATCCTTTTCTCTCTGCTGAAGGTGTTGGTTACGCCCAGCGAGCACTGAACAATTGTGTAGAAAACGAAGAGCATTTAAGGGGTGTGGGTCTTCGCTTGTTAGGCCTTTGTTTGGGAAAGCAAGCCAAAATGTCTTCCTCTGACTTAGAGAGGTCTCGTCTTCAGTCAGACGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGAAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTTCATTGATGAAACAGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTCACCGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTGCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTTCTTGCGTTAGTTCAAGCGCAAAAGAAATCGTTTGGGCATCTCAGAATTGTCCCTCAGGTTGAAGATGACAAAGTGAATGAATTTGAAGTTTGGAATGGTCTAGCCAATTTATACTCCAGTCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAGGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGAAGCGAGAAAATACAAGAAGCTCTAGCTGCTTATATTAATGCTATCCTACTCGAACCGACTTACGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCGGACGCATTGCCTATAGCAAGAAGCTTACTTTCAGATGCATTGAGATTAGATCCAACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATAGGGACGAAGGACGAATGGCTGATGCTGTAGACTGCTTTCAGGCAGCCGCCATGCTTGAAGAATCAGACCCCATTGAAAGCTTCAGCAGTGTTCTCTAA 2124 43.55 MSTVDEDDREPAMESGESDEGIVVREFCANGVCIKTSEVEAKLDEGNIQEAESSLREGLSLNLEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSIAEKTPPKKGRSRPESQQAVSQHAASLVLEAIYLKVKSLQKLGRVNEAADECTSVLDAVEKIFQQGIPDAQVDGRLQDTISQAVELLPELWKQAGCFQEAVSAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKKCYLCKIKWDPSVMEHLIFALSTCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKCLHKHEKPDDVAALLLAAKVCSEDPFLSAEGVGYAQRALNNCVENEEHLRGVGLRLLGLCLGKQAKMSSSDLERSRLQSDALKSLEAASGLERNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGHLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPEVLHTEGLMCEGSEKIQEALAAYINAILLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAVDCFQAAAMLEESDPIESFSSVL 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3547046 3553320 + CmoCh09G007160.1 Cmo09g00716 388718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00716 707 SUPERFAMILY TPR-like 315 515 IPR011990 GO:0005515
Cmo09g00716 707 Pfam Tetratricopeptide repeat 667 699 IPR019734 GO:0005515
Cmo09g00716 707 SUPERFAMILY TPR-like 511 696 IPR011990 GO:0005515
Cmo09g00716 707 MobiDBLite consensus disorder prediction 1 20 - -
Cmo09g00716 707 Gene3D Tetratricopeptide repeat domain 36 216 IPR011990 GO:0005515
Cmo09g00716 707 Gene3D Tetratricopeptide repeat domain 242 634 IPR011990 GO:0005515
Cmo09g00716 707 SMART tpr_5 471 504 IPR019734 GO:0005515
Cmo09g00716 707 SMART tpr_5 665 698 IPR019734 GO:0005515
Cmo09g00716 707 SMART tpr_5 315 348 IPR019734 GO:0005515
Cmo09g00716 707 SMART tpr_5 561 594 IPR019734 GO:0005515
Cmo09g00716 707 SMART tpr_5 595 628 IPR019734 GO:0005515
Cmo09g00716 707 Gene3D Tetratricopeptide repeat domain 646 703 IPR011990 GO:0005515
Cmo09g00716 707 PANTHER CALMODULIN-BINDING PROTEIN 13 706 - -
Cmo09g00716 707 PANTHER PROTEIN NPG1 13 706 IPR043376 -
Cmo09g00716 707 ProSiteProfiles TPR repeat profile. 665 698 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01776 Cmo-Chr2:10125829 Cmo09g00716 Cmo-Chr9:3547046 0 dispersed
Cmo06g01314 Cmo-Chr6:9826153 Cmo09g00716 Cmo-Chr9:3547046 0 dispersed
Cmo09g00716 Cmo-Chr9:3547046 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo01g01381 Cmo-Chr1:10874312 Cmo09g00716 Cmo-Chr9:3547046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00716 K21843 - csv:101206641 1275.77