Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00728 ATGGCTAAACCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCACGTTCCCGCTCATACTCCGGCTCTGGTTCCCGCTCCAGCTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTATCTCGAAGCGGTTCTTCTCGAAGCCGAAGCCCCGCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAAAGAAATCTTCAGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTTGCCGTTCTCCATCGCCTTTGGCAAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGACGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGCAGAAGGAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCACGGAGAGGTCGGCCTGCAGCCGCTGGTAGACGTGGGAGATCACCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAA 1236 53.64 MAKPSRGRRSPPSGSGSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGCRSPSPLARRHRSPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRRGRSPSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3629722 3635730 - CmoCh09G007280.1 Cmo09g00728 388730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00728 411 SMART rrm1_1 107 180 IPR000504 GO:0003723
Cmo09g00728 411 Gene3D - 15 189 IPR012677 -
Cmo09g00728 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Cmo09g00728 411 MobiDBLite consensus disorder prediction 312 354 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 248 272 - -
Cmo09g00728 411 CDD RRM_RNPS1 108 180 IPR034201 -
Cmo09g00728 411 PANTHER BNAA09G56240D PROTEIN 1 402 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 10 75 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 206 231 - -
Cmo09g00728 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Cmo09g00728 411 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 402 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 395 411 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 182 411 - -
Cmo09g00728 411 MobiDBLite consensus disorder prediction 1 103 - -
Cmo09g00728 411 SUPERFAMILY RNA-binding domain, RBD 87 196 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00728 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - csv:101216970 268.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01363 Cmo09g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00728 Cmo-Chr9:3629722 Cmo01g01216 Cmo-Chr1:9802995 3.26E-13 dispersed
Cmo01g01363 Cmo-Chr1:10739249 Cmo09g00728 Cmo-Chr9:3629722 1.08E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00728 Cmo_Chr09 FPKM 1.716275 1.656931 0.0 0.0 0.393025 0.0 0.600475 0.0 0.0 0.0