Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00742 ATGGCGGGGCAGGTAAAAGGCGTCGGTTGCACGTGTGCGAGCTCAGTTTCACACGTGAATCTTACAACTATCGTGCTCACAGCGATTTTTGGTATTTTTTTAGCATCACATTCCCCGATTCATCTGCATTTCACGCTTGCTGGATCTTGGATCGGTTTGCAGGTGGCGTCTTTCTTGTGGCAGCTCGTAGTTACCAATTTAATATATGTTGAAGAAAACCATTCCAGGATTTGGTATTTCAGATGGTTTATTGTAATTGTATTATGCTTGACTGTTGCCACCATGGGCTTCTATACGGTAAAATGTCAATGGCTACTGATTCTTCACATTGTTCCGCTTTGCTTGATAATGAGCAGAAGCAGTGGTATCAGTTCTGATGGTGAGGCACTTTTGAGCTTCAGAGCAGCAATTCTTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGAACGCCATCCTTGTAAATGGAAAGGAGTAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTTATCACAAACTTAGTGGATCGTTATCCCCTGAACTTGGAAAGCTTGATCAACTAAAAGTTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGCATGTTCCTGCAGGGTAATTATTTTAGTGGGTTCATTCCCAATGAATTGGGGAATCTTTCAGCACTTCTAAATTTAGATATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTTGGGAAGCTGAGCAAGCTTATTACTCTAAATGTTTCTGCCAATTTTCTGGTTGGATCAATACCAAATGTTGGCGTGCTAATCAACTTCTCCGAAAGTTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATCAATGTTATGTGCAAACATGACAAGGAGGGACCAGGAAGAAATGAGTCACCATTCTCAGTGCAAAGTCAAATTGAGAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCCGCTACTGTGGGTGCTTTGCTGTTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTATGTATAAAAAGTTCGGCAAAAATGACAATAAAGGGCAAGTGCTCGATGTTTGTGGAGGTGCATCGGGTGTAATGTTTCACGGAGACTTGCCATACTCATCTAAAGATATTATTAAGAAATTTGAGACATTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACGGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAGAGAATTGTAAAATTGAACGAGGGCTTTGATCGATTTTTTGAGAGGGAGCTTGAAATCCTTGGAAGCATAAAACACAGGTTCCTTGTGAATTTGCGAGGATATTGCAAGTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTTCTGGAGGCAGCCTTGATGAGGCACTACACGGGGTCCGTACTGAAGCATCGGATCAACTATACTGGGACGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCTTATTTGCATCATGATTGCTCCCCGCGGATCATTCACCGAGACATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGATTTTGGACTTGCGAAGCTTTTAGAGGATGAAGAATCTCATATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTGTACAGTTTTGGAGTATTGGTACTTGAAGTGATGAGTGGCAAACGTCCCACGGATGCATCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGCTAAACTTTCTAGTCTCGGAGAATCGACAACGAGAAATAGTCGATCCACATTGTGAGGGCATGCAAACAGAGAGCCTCGATGCATTGCTTTCAGTTGCCATCCAATGTGTTTCGTCGAGTCCAGAGGATCGACCAACCATGCACAGGGTGGTCCAGATACTAGAATCTGAGGTTATGACTCCATGTCCAAGTGATTTCTATGATACAGATTAA 2076 42.2 MAGQVKGVGCTCASSVSHVNLTTIVLTAIFGIFLASHSPIHLHFTLAGSWIGLQVASFLWQLVVTNLIYVEENHSRIWYFRWFIVIVLCLTVATMGFYTVKCQWLLILHIVPLCLIMSRSSGISSDGEALLSFRAAILDSDGVLLQWKPEERHPCKWKGVTCDPKTKRVIYLSLPYHKLSGSLSPELGKLDQLKVLALHDNNFYGTIPSELGNCSQLQGMFLQGNYFSGFIPNELGNLSALLNLDISSNSLGGNIPISLGKLSKLITLNVSANFLVGSIPNVGVLINFSESSFLGNRGLCGKQINVMCKHDKEGPGRNESPFSVQSQIERKKYSGRLLISASATVGALLLVALMCFWGCFMYKKFGKNDNKGQVLDVCGGASGVMFHGDLPYSSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCKSPTSKLLIYDFLSGGSLDEALHGVRTEASDQLYWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVMSGKRPTDASFIEKGLNIVGWLNFLVSENRQREIVDPHCEGMQTESLDALLSVAIQCVSSSPEDRPTMHRVVQILESEVMTPCPSDFYDTD 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3721073 3728870 + CmoCh09G007420.1 Cmo09g00742 388744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00742 691 ProSitePatterns Protein kinases ATP-binding region signature. 410 436 IPR017441 GO:0005524
Cmo09g00742 691 Gene3D Ribonuclease Inhibitor 123 310 IPR032675 -
Cmo09g00742 691 SUPERFAMILY Protein kinase-like (PK-like) 390 675 IPR011009 -
Cmo09g00742 691 Pfam Leucine rich repeat N-terminal domain 124 163 IPR013210 -
Cmo09g00742 691 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 98 689 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cmo09g00742 691 Gene3D Transferase(Phosphotransferase) domain 1 480 683 - -
Cmo09g00742 691 SMART serkin_6 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00742 691 Pfam Protein kinase domain 406 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00742 691 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00742 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Cmo09g00742 691 Gene3D Phosphorylase Kinase; domain 1 381 479 - -
Cmo09g00742 691 PANTHER RECEPTOR-LIKE PROTEIN 55 98 689 - -
Cmo09g00742 691 SUPERFAMILY L domain-like 123 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00742 Cmo-Chr9:3721073 Cmo18g00100 Cmo-Chr18:681892 0 dispersed
Cmo04g00625 Cmo-Chr4:3105407 Cmo09g00742 Cmo-Chr9:3721073 0 transposed
Cmo01g01399 Cmo-Chr1:11005838 Cmo09g00742 Cmo-Chr9:3721073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74576 PF00069 Pkinase 1.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00742 - - cpep:111797176 1272.69