Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00760 ATGGGAAGAGGAAAGATTGAAATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGAAGAAATGGTATCATCAAGAAGGCCAAAGAGATCACTGTTCTTTGTGATGCTCAAGTATCTCTTGTGGTGTTTGCTAGCTCTGGCAAAATGCATGAGTATTGTAGCCCTTCTACACCGTTGATTGATATCTTGGATAAGTATCATAAGCAATCGGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATTTAAGCAATGAAATGGATAGAGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCGTTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCCCTTGAAAATGGCCTTACTGGTGTTCGTGAGAAGCAGTCGGAGCTCATGAAGATGATGAGGACAAATGAAAGAATGATGGAAGAAGAAAACAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGGATGAGAGATTTCAATTCTCAAATGCCCTTTGCGTTCAGAGTGCAGCCCATTCAGCCAAACCTACAAGAAAGGAACAATTAA 639 40.53 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3841900 3844789 - CmoCh09G007600.1 Cmo09g00760 388762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00760 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo09g00760 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Cmo09g00760 212 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Cmo09g00760 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cmo09g00760 212 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 210 - -
Cmo09g00760 212 Coils Coil 135 155 - -
Cmo09g00760 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cmo09g00760 212 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo09g00760 212 Coils Coil 77 111 - -
Cmo09g00760 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo09g00760 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01418 Cmo09g00760 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02003 Cmo-Chr1:14129143 Cmo09g00760 Cmo-Chr9:3841900 1.10E-44 dispersed
Cmo07g00024 Cmo-Chr7:151709 Cmo09g00760 Cmo-Chr9:3841900 4.26E-33 dispersed
Cmo09g00122 Cmo-Chr9:563424 Cmo09g00760 Cmo-Chr9:3841900 4.06E-42 dispersed
Cmo09g00760 Cmo-Chr9:3841900 Cmo03g01352 Cmo-Chr3:9999265 7.57E-36 dispersed
Cmo01g01418 Cmo-Chr1:11128669 Cmo09g00760 Cmo-Chr9:3841900 1.09E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10369 PF01486 K-box 7.70E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00760 K09264 - csv:101222239 402.519