Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00762 ATGTTGAAGCCGAAGCCGTTTGCCGGAGCCAATGTGTTCGTGTCCCGCAATCTTGTCGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGTGATCCTGCTCGAAACGGCCCTAAAGATTATCATGTTATCTCCTCAGCCGATCACGAAAAGTTTGAGGATCTTCGTGCGAAGGGATGCAATTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGAACAGACCCCTTCCTCAGCAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAAATTCTTGCATCTGGTTTTCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCAGACGAGAGCATCTGCAGATGTCAGCTTTGTCATCGCGAAGAATGCTTTGGCTGCAAAATACAAGTGGGCACTTAACATTTCAAAGAAACCTATTGTCACAATTACTTGGTTACAGCAGTGCTGGATTGAACATCGTGTAGTGCCACAGGATGGATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCCGCAGATGAGCGCAAGGAGATCGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATGTAGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGTTAGAAGAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGCAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGAAAAGGTTAATGGGAACGTGCAAGCTGCACCGTCCTCATTTATTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTTACAATGTCAAAGAACGAAGAAAACACTGAAAATTGCATTGCAAATGACTTCCAATCTGAAGACAACGACTTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGGTACATGCTGTTCAATGACAAGTTAACACACATAATTGTTGGAAATCCGTCAGAAATGGAGAAAAAAGAGGTTAGAGACATTGCAGCTTCAGGTGTTATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCCGTTCTTGGCAGACACATGGCCTATGATGAACTTATCCCTAAAGGTTTGATATCATCCTGTAAAACAAGCACTATTGTTATGGATCGGAATAAAGTTCCTAATGTTCATCCAATCATGCCATTGAATGGGTTAGAAGGTAATTTTCATGCTAAAATTGGAAAGACATCAATGATAGAGGAAAGAATTCAAGAAAAAAGTGAAGCAAATGTGGGTGGAGACAAGACCACAAAATTGTCTCAGAAAAGCCAACATTCTGTACCAAATGGTATGAACAAGAGTCAAGAAAAGTTGCGGCGTGATGTCATGGTTCCAAATGGGAAGTCATCATGTGTGTATAAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAAGTGGTTGAGGATCATACGAAACAGAAAGTGCACTTCACAGTTGGATGTCATGGTGTGATACCAAGGAGTACAGATGTTCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGTTTGTCGGATACCAATGAGCACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGCCTGGGTTTGAAAGAATACGGTTCTGTGTTTCACAATATGAAGACAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTCGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATCTATGAGTGTGTCAGACAGAGTAAGCTTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGATAGAGAGGCAGGCTTATGTACTGTCAGTCAGTTTCCTACACAAGCTGGCCAAATGATAGCCGGTGAAGGTGAATCCCAGTTCCCTACCCATTCTGCTATCTTGAGAGATCAATCAGCTGGAACTAACAGTAGCTCTGTGGGAGAAGTTGAACAAATAAGTTTTACTAATAAAAAGCGGAAATTCCTTGACGAACCTATACAAAAACGTCCTATATTTGTTGGAAACAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTTGCTGCCGCGATTGAGGACTTGTTGGAGCAGACGAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGGTCAAGACCATTCAGAAGCTCCTCCAGTTGGTGGTTCATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAAGAAGACGTCAGCGATCCTACTACTGGAGATGGGTGTGCAGGGGCATATGATGGTTTTAGTGAAACGCAAACCGAATCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTACGAACCCGGAGTAGCATGATTTGA 2910 42.27 MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADHEKFEDLRAKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWALNISKKPIVTITWLQQCWIEHRVVPQDGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICSDKYKVARTWGHINIVTRKWFDQSIVRRACLNEELYPVGSVSATSNKMARGCLTSHNSQEKVNGNVQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDVEVPVTMSKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKGLISSCKTSTIVMDRNKVPNVHPIMPLNGLEGNFHAKIGKTSMIEERIQEKSEANVGGDKTTKLSQKSQHSVPNGMNKSQEKLRRDVMVPNGKSSCVYKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGFERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSVTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTHSAILRDQSAGTNSSSVGEVEQISFTNKKRKFLDEPIQKRPIFVGNSLTHFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMI 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3854666 3862979 + CmoCh09G007620.1 Cmo09g00762 388764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00762 969 Gene3D BRCT domain 349 457 IPR036420 -
Cmo09g00762 969 ProSiteProfiles BRCT domain profile. 662 745 IPR001357 -
Cmo09g00762 969 ProSiteProfiles BRCT domain profile. 369 461 IPR001357 -
Cmo09g00762 969 CDD BRCT 103 170 - -
Cmo09g00762 969 SUPERFAMILY BRCT domain 568 651 IPR036420 -
Cmo09g00762 969 MobiDBLite consensus disorder prediction 527 547 - -
Cmo09g00762 969 Gene3D BRCT domain 660 752 IPR036420 -
Cmo09g00762 969 CDD BRCT_TopBP1_rpt2_like 660 735 - -
Cmo09g00762 969 CDD BRCT_TopBP1_rpt2_like 186 254 - -
Cmo09g00762 969 MobiDBLite consensus disorder prediction 914 940 - -
Cmo09g00762 969 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 957 - -
Cmo09g00762 969 SUPERFAMILY BRCT domain 371 455 IPR036420 -
Cmo09g00762 969 Gene3D BRCT domain 97 185 IPR036420 -
Cmo09g00762 969 Gene3D BRCT domain 186 267 IPR036420 -
Cmo09g00762 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cmo09g00762 969 Pfam twin BRCT domain 103 166 IPR001357 -
Cmo09g00762 969 Pfam twin BRCT domain 666 727 IPR001357 -
Cmo09g00762 969 Pfam twin BRCT domain 190 249 IPR001357 -
Cmo09g00762 969 SMART BRCT_7 184 257 IPR001357 -
Cmo09g00762 969 SMART BRCT_7 659 735 IPR001357 -
Cmo09g00762 969 SMART BRCT_7 97 174 IPR001357 -
Cmo09g00762 969 SMART BRCT_7 564 639 IPR001357 -
Cmo09g00762 969 SMART BRCT_7 371 451 IPR001357 -
Cmo09g00762 969 MobiDBLite consensus disorder prediction 521 549 - -
Cmo09g00762 969 Gene3D BRCT domain 559 655 IPR036420 -
Cmo09g00762 969 SUPERFAMILY BRCT domain 626 746 IPR036420 -
Cmo09g00762 969 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Cmo09g00762 969 SUPERFAMILY BRCT domain 186 268 IPR036420 -
Cmo09g00762 969 Gene3D BRCT domain 32 94 IPR036420 -
Cmo09g00762 969 ProSiteProfiles BRCT domain profile. 562 649 IPR001357 -
Cmo09g00762 969 ProSiteProfiles BRCT domain profile. 182 267 IPR001357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00762 Cmo-Chr9:3854666 Cmo17g01015 Cmo-Chr17:8706396 1.40E-08 dispersed
Cmo05g01026 Cmo-Chr5:8273682 Cmo09g00762 Cmo-Chr9:3854666 2.64E-08 transposed
Cmo01g01419 Cmo-Chr1:11136871 Cmo09g00762 Cmo-Chr9:3854666 2.62E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00762 K10728 - csv:101212525 1621.68