Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00776 ATGGCGGAGAGAGCGGTGTTTGACGGAGAAGCGGCAGAGAGAGTGGTGGCGAAGCTGAGGGAGAGCTATAATTCCGGGAAGACGCGAAGCTACGAATGGAGAGTGAATCAATTGAAGAATCTGTTGAAGTTGATCGAAGAAAACGAGGAAGAGATGGTCGATAAGATCCATTCGGATCTCCATAAACCCGAACCCGAAGCCTTCGCCCATGAGGTAGGTCTGTTAAAAAATTCGTGTCAATTGGCACTTAAAGAACTTAGGCATTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCATATTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGGTGTTGTCCTGATAATTTCAGCCTGGAATTATCCATACTTGGTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCATCGACATCATCTTTAATGGCTAAACTTTTAGGGAAGTATTTGGATACTTCTGCTGTAAGAGTTGTTGAAGGTGCTGTTCCCGAAACTTCTGCTTTGCTTGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTAGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTATTAGAGCTTGGAGGAAAATCTCCAGTGGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATTTCTGGTAAGTGGGGTTGCAACAATGGACAAGCATGCGTTTCTCCTGATTATGTTATAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTCCCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCATTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTTACCACTTTGATCGCTTGATAAAACTCTTAGAGGATGATAAAATTTCTGGCAAGATTGTGCATGGTGGTGAAAAGGACAAATCCAAATTGCAGATTGCTCCCACTCTCCTAGTGGATGTTCCTCGAGACTCTCTGATTATGACGGAGGAGATATTTGGTCCCTTACTTCCCATTCTCACGGTCGACAAAGTGGAGGACAGCTTTGAAGTAGTCAACTCGGGCTCGAAGCCACTTGCAGCATATTTATTTACCAACAATAAGAAGCTCAAGGAACGGTTCGTGGCCTGTATCTCTGCAGGGGCCATAGGCATCAATGATACCGCCTTACAGCTGTCGGTTAACACACTACCATTCGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTCTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAATTTTCGCAGGCGACGTGCCGATGAGATACCCGCCTTACTCAAACGAAAAGCTACGATTTCTGAAAGCTCTTCTCGGAGGTAGCCTATTGGAACTCATTCGTGCTCTTCTTGGTTGGTAG 1452 44.21 MAERAVFDGEAAERVVAKLRESYNSGKTRSYEWRVNQLKNLLKLIEENEEEMVDKIHSDLHKPEPEAFAHEVGLLKNSCQLALKELRHWMAPEKVKTSITIFPSSAAIVPEPLGVVLIISAWNYPYLVSLDPVVGAIAAGNAVVLKPSEISPSTSSLMAKLLGKYLDTSAVRVVEGAVPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIISGKWGCNNGQACVSPDYVITTKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAYHFDRLIKLLEDDKISGKIVHGGEKDKSKLQIAPTLLVDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEVVNSGSKPLAAYLFTNNKKLKERFVACISAGAIGINDTALQLSVNTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRIFAGDVPMRYPPYSNEKLRFLKALLGGSLLELIRALLGW 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3947115 3954080 - CmoCh09G007760.1 Cmo09g00776 388778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00776 483 Coils Coil 35 55 - -
Cmo09g00776 483 PIRSF ALDH 2 478 IPR012394 GO:0006081
Cmo09g00776 483 PANTHER ALDEHYDE DEHYDROGENASE 3 483 - -
Cmo09g00776 483 SUPERFAMILY ALDH-like 13 458 IPR016161 GO:0016491
Cmo09g00776 483 Pfam Aldehyde dehydrogenase family 8 441 IPR015590 GO:0016491
Cmo09g00776 483 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 20 439 IPR016162 GO:0016491
Cmo09g00776 483 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491
Cmo09g00776 483 PANTHER ALDEHYDE DEHYDROGENASE 3 483 IPR012394 GO:0006081
Cmo09g00776 483 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00776 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219329 815.839
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01433 Cmo09g00776 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01433 Cmo-Chr1:11208760 Cmo09g00776 Cmo-Chr9:3947115 0 dispersed
Cmo09g00776 Cmo-Chr9:3947115 Cmo16g00705 Cmo-Chr16:3511971 3.30E-164 dispersed
Cmo09g00775 Cmo-Chr9:3940010 Cmo09g00776 Cmo-Chr9:3947115 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00644 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.6 1.5e-213 739.6
Cmo11g00602 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 1.5e-208 723.0
Cmo12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 6.4e-159 558.1
Cmo05g00005 . 3 475 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 2.1e-154 543.1
Cmo11g00105 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.7e-154 542.0
Cmo11g00105 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 4.2e-257 884.4
Cmo12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 3.2e-249 858.2
Cmo05g00005 . 8 475 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 8.7e-231 797.0
Cmo10g00644 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 1.1e-161 567.4
Cmo11g00602 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 52.8 3.7e-157 552.4
Cmo12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.9e-169 592.8
Cmo11g00105 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 6.7e-167 584.3
Cmo05g00005 . 3 319 Aldehyde Dehydrogenase Gene Family AT1G23800 81.1 3.5e-155 545.4
Cmo10g00644 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.8e-104 375.6
Cmo11g00602 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 5.8e-102 368.6
Cmo01g01433 CST 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 1.7e-181 633.3
Cmo09g00776 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 5.9e-179 624.8
Cmo09g00775 . 66 523 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 4.1e-172 602.1
Cmo09g00775 . 111 521 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 3.7e-176 615.1
Cmo01g01433 CST 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 8.2e-176 614.0
Cmo09g00776 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 1.2e-174 610.1
Cmo16g00705 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.5 2.3e-182 636.0
Cmo02g01283 . 5 497 Aldehyde Dehydrogenase Gene Family AT4G36250 53.8 5.0e-153 538.5
Cmo20g00311 . 39 553 Aldehyde Dehydrogenase Gene Family AT1G79440 75.0 6.8e-228 787.3
Cmo02g00667 . 29 447 Aldehyde Dehydrogenase Gene Family AT1G79440 55.2 4.5e-147 518.8
Cmo11g01452 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.3 5.3e-245 844.3
Cmo03g00888 . 211 615 Aldehyde Dehydrogenase Gene Family AT2G14170 69.4 1.9e-170 596.7
Cmo10g00162 . 1 531 Aldehyde Dehydrogenase Gene Family AT1G74920 76.1 2.6e-245 845.1
Cmo10g00162 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G48170 76.7 4.8e-247 850.9
Cmo12g01175 . 72 567 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 1.9e-267 918.7
Cmo05g01265 . 23 143 Aldehyde Dehydrogenase Gene Family AT2G24270 81.1 2.2e-50 197.6
Cmo13g00961 . 32 590 Aldehyde Dehydrogenase Gene Family AT5G62530 75.2 5.2e-255 877.5
Cmo17g00356 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 2.3e-277 951.8
Cmo08g01242 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 2.5e-271 931.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00776 Cmo_Chr09 FPKM 5.6 4.95876 18.761068 18.589272 16.398127 13.132361 21.35787 3.871405 3.143104 6.12259