Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00792 ATGGGTGCTGACACTGGCCTTGCTATGTTTTGTGGTCTCATTCATAAAATCAAACCCTACTTAGCTATGATCTCCTTGCAATTCGGCTACGCCGGGATGTACATCGTTACCATGCTGTGTTTCAAAAAGGGTATGAACCATTACGTTCTTGCTGTCTATCGACACGTCGTTGCCACCATTGTCATCGCTCCATTCGCTTTCGTCCTTGAAAGGAAAATAAGGCCGAAGATGACATTCCCGATTCTCGCTCGGATATTGGCGCTCGGCTTTCTCGAGCCTGTGTTGGATCAAAATTTGTACTATGTGGGTCTGAAACTTACCTCAGCAACATTCACCTCTGTCACTATCAATATTCTTCCTGCTGTTACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGAGTGAACTTCAAGAAGGTTCGTAGCATTGCAAAGGTGGTCGGAACATTGGTGACGATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCCATCGTCGACATCTTCCACGGCCAAGGACGCCATGCCGCCCACCAAAGCAGCGGCAGCGAATCCTCCGACCAGCACTGGGTCCTCGGCACTCTCATGCTCCTTGGCAGCATCGTCGGTTGGTCCGGCTTCTTCATCTTACAATCGTTCACACTGAAGAAATACCCGGCAGAGCTGTCGTTGACCGCCTTGATATGTGTAGCCGGCACGGTGGAGGGCTCCATTGTTACCCTTATTATGGAGCGCGACATGAGCGTCTGGGTCATCGGCTGGGACTCTCGGCTTCTCGCCGCCGTTTACACCGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGCGTGGTAATTCGTGAACGTGGCCCTGTTTTTGTTACCTCTTTTACCCCTCTCTGTATGATTATTACCGCCATCCTTGGCTCCATTGTTTTGGCCGAGCAAATTCACCTCGGAAGCATAATCGGAGCCATTTTCATAGTGATGGGACTATACTTAGTGGTATGGGGCAAAGCCAAGGACCATATAAACAAACCGACGAACCAAAAAAGCGGCGCCGCCACTGAATTACCGATCACCGCCGAGCCGGAAACCACCACCACCACTCTCTCCGCCGAGCGCTGCTCTTCCAAGGCTCCACCGGCGTGA 1137 50.66 MGADTGLAMFCGLIHKIKPYLAMISLQFGYAGMYIVTMLCFKKGMNHYVLAVYRHVVATIVIAPFAFVLERKIRPKMTFPILARILALGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLERVNFKKVRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGQGRHAAHQSSGSESSDQHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICVAGTVEGSIVTLIMERDMSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHINKPTNQKSGAATELPITAEPETTTTTLSAERCSSKAPPA 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 4054770 4057634 - CmoCh09G007920.1 Cmo09g00792 388794
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00792 378 PANTHER WAT1-RELATED PROTEIN 13 357 - -
Cmo09g00792 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Cmo09g00792 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 335 - -
Cmo09g00792 378 PANTHER WAT1-RELATED PROTEIN 13 357 IPR030184 GO:0016021|GO:0022857
Cmo09g00792 378 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Cmo09g00792 378 Pfam EamA-like transporter family 21 147 IPR000620 GO:0016020|GO:0016021
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo04g02464 Cmo09g00792 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02464 Cmo-Chr4:18217217 Cmo09g00792 Cmo-Chr9:4054770 3.26E-140 dispersed
Cmo07g01014 Cmo-Chr7:5018602 Cmo09g00792 Cmo-Chr9:4054770 2.24E-131 dispersed
Cmo09g00792 Cmo-Chr9:4054770 Cmo18g00829 Cmo-Chr18:9683649 1.63E-123 dispersed
Cmo10g00283 Cmo-Chr10:1264072 Cmo09g00792 Cmo-Chr9:4054770 7.98E-86 dispersed
Cmo15g01405 Cmo-Chr15:9569938 Cmo09g00792 Cmo-Chr9:4054770 9.82E-86 dispersed
Cmo20g01088 Cmo-Chr20:10336094 Cmo09g00792 Cmo-Chr9:4054770 2.40E-74 dispersed
Cmo01g01443 Cmo-Chr1:11262018 Cmo09g00792 Cmo-Chr9:4054770 3.84E-147 wgd
Cmo04g02463 Cmo-Chr4:18212099 Cmo09g00792 Cmo-Chr9:4054770 6.29E-143 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00792 - - csv:101216002 655.595