Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00797 ATGGCTTTGAGCCCACCTCCCCGCACAACCAACGACCGCCGCCATGCCAGAACCTTCCACCTCTACTGGTGCCACCAATGCCATCGGACCGTCACCCTCGCCTCCGCAGAACCGTCGGACCTCACATGCCCACGCTGTTTCGGCCACTTCGTTGAAGAGGTCCACCTCCCCCTCCCCGAACTCGATCCTTCACCGGAGACTCGTTTACTCGAAGCTCTCTCACTAATGCTAGACCCACCGGTTCGTCTCTTCAATTACCGACACCCAGACCCGGACCGCCGCCGTCCACCGCTGCATAGGTTCGACGATTTCGACCGGAGATCATTTAGCGATCCGGAAGGGGACGAATGGCTGCACTGGCGAACACGACGGCGCAGTCGAAGCCTGGATGAGAGGGACAATTCCGGCCGACAACCCCCAAATCCGAACCAGTCTCGAACTGTCATAGTTCTCGGTCCCCCCGACCAGTTTCAGCCGATTCAGCCCATAATACCTCGGAGAGCCAATCCAAGAGACTACTTTACCGGGCCAAGACTCGACGAATTAATTGAAGACCTGACACAGAACGATCGGCCAGGGCCACCGCCGGCAGGGGAGGAGGCGATCGAGAGGATACCGACGGTGAAGATAGCGGCGGAGCATCTGAAGAACGACTCGCAGTGTCCAGTTTGTAAGGAGGAGTTTGAGGTGGGGGGAGAAGCAAGGGAATTGAGTTGTAAGCATTTATACCATTCGGAGTGTATAGTTCCGTGGCTTCGGCTTCACAACTCTTGCCCAGTTTGTAGGCAAGAGATACCGCCATTGCCGCCGGAGAATGGAGCGGCGGGAAATTCTGAAAATGGAGTACGGATAGGGAGAGCATGTACCAGGTGGTGGAATCGGTTGGCGTCTTGGCTATTTCGGAATAGGTATAGGCAGATTAGTCCTTCAAGTCCACCGAACCGCTTCAATGCTTCTTCTTATCCAGGTGATGTCTAA 978 55.83 MALSPPPRTTNDRRHARTFHLYWCHQCHRTVTLASAEPSDLTCPRCFGHFVEEVHLPLPELDPSPETRLLEALSLMLDPPVRLFNYRHPDPDRRRPPLHRFDDFDRRSFSDPEGDEWLHWRTRRRSRSLDERDNSGRQPPNPNQSRTVIVLGPPDQFQPIQPIIPRRANPRDYFTGPRLDELIEDLTQNDRPGPPPAGEEAIERIPTVKIAAEHLKNDSQCPVCKEEFEVGGEARELSCKHLYHSECIVPWLRLHNSCPVCRQEIPPLPPENGAAGNSENGVRIGRACTRWWNRLASWLFRNRYRQISPSSPPNRFNASSYPGDV 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4079832 4080809 - CmoCh09G007970.1 Cmo09g00797 388799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00797 325 MobiDBLite consensus disorder prediction 127 147 - -
Cmo09g00797 325 Pfam zinc-ribbon 22 53 IPR039525 GO:0061630
Cmo09g00797 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
Cmo09g00797 325 Pfam Ring finger domain 220 262 IPR001841 -
Cmo09g00797 325 MobiDBLite consensus disorder prediction 85 106 - -
Cmo09g00797 325 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Cmo09g00797 325 PANTHER - 136 298 - -
Cmo09g00797 325 PANTHER - 12 93 - -
Cmo09g00797 325 SUPERFAMILY RING/U-box 201 268 - -
Cmo09g00797 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 298 - -
Cmo09g00797 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 93 - -
Cmo09g00797 325 SMART ring_2 221 261 IPR001841 -
Cmo09g00797 325 CDD RING-H2_RNF126_like 220 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00797 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101215288 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00797 Cmo-Chr9:4079832 Cmo04g01246 Cmo-Chr4:6318459 6.75E-34 dispersed
Cmo04g00555 Cmo-Chr4:2742402 Cmo09g00797 Cmo-Chr9:4079832 3.06E-28 transposed
Cmo01g01439 Cmo-Chr1:11237380 Cmo09g00797 Cmo-Chr9:4079832 7.78E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00797 Cmo_Chr09 FPKM 0.218176 0.0 2.356501 1.710799 1.670312 2.286958 1.811519 4.300909 2.979123 3.244625