Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00798 ATGGATGGTTCGAAAAGTCAGTTGAAGCTTACAAGGACTCAGTCGTCGTTACTTCGTTCGTCGCCCACTTTCCGAACGTCTGTTCATAGTTTATCGTCCGTCACCGAGGAGGATCTCATCGCCATCCATCAAGAGGATGATGATGAAGAGAAGCAGAGGCCTAAGAAGCCTCGTAGGTCCAGTTCGTCATCGAGAGCCGGATTGAATCGATTTGCGAACCGTGTTGTTGCTATGGCTTTGCTTGTTTGCTTTACCTTCTTCTCTTTGCTCATTGCGTTCTTCTTTCTGAAGAAGGATGGGATACTCCCGTCGGCTTGCTTGTTGGCTCTGATTTTTGTTGCTATTATGCTTGTATTTGTGAGCAAGAATAAGGGATTAATTTTACATGTTCTTTCGTTTATAAAGCATTCTTGGCAAGAAAATGCCAAGAGATTCTGTTTCTCCAGGACGGATTCGACTCCTATTCAGTGGTACATTGGTGATTCGAACGGAGCCGAAGACGACAACCAAAATCAGAGAAAAATTAGCAGAGAGGGGGTAGAGTTCTATAGCAATGGTGATTTCTACGAGGGAGAGTTTCACAACGGGAGTTGTAATGGAAGTGGGGTTTATAACTATTTCCTAAGTGGGAGATACGAGGGAGATTGGGTCGATGGGAGGTACGATGGCCATGGGGTTGAGACCTGGGCGAAGGGGAGTCGTTACAGGGGTCAGTATCGACAGGGTCTTAGACATGGATTTGGAGTCTACAAGTTCTTCACGGGGGATTACTATGCTGGTGAGTGGTCTAATGGCCAAAGCCATGGCGTTGGGCTTCAGACTTGCGCTGATGGTAGCTGCTATGTTGGCCAGTTCCACCGCGGCGTTAAGCATGGTCTTGGATCTTACTATTTCAGAAATGGAGATAGATATGCTGGAGAGTACTTTGGGGACAAAGTTCATGGTTTCGGAATCTACCATTTCGCGAATGGCCATTGTTACGAAGGATCATGGCATGAAGGCCAAAGGCAAGGATATGGCACGTATACGTTCCGAAACAGCGAAGCCAAATGCGGTGGATGGGATGCTGGTAGCCTCAAGCAGCCTCTCTCGCCGCTGAGCGAGGCCGTTGTTGAAGCTGTTCAGGCATCTAGAAAGGCAGCAAGGAATGCTATAAACCTTCCCCGATGGGATGAACAAGTGAATAAAGCTGTGGTTGCTGCTAATAGATCGGCCACCGCGGCCCGAGTCGCAGCCATCAAAGCCGTTCAAAATCGAATGGACGGTAAGTTCTGCGATTCGGATGTGTAA 1290 47.91 MDGSKSQLKLTRTQSSLLRSSPTFRTSVHSLSSVTEEDLIAIHQEDDDEEKQRPKKPRRSSSSSRAGLNRFANRVVAMALLVCFTFFSLLIAFFFLKKDGILPSACLLALIFVAIMLVFVSKNKGLILHVLSFIKHSWQENAKRFCFSRTDSTPIQWYIGDSNGAEDDNQNQRKISREGVEFYSNGDFYEGEFHNGSCNGSGVYNYFLSGRYEGDWVDGRYDGHGVETWAKGSRYRGQYRQGLRHGFGVYKFFTGDYYAGEWSNGQSHGVGLQTCADGSCYVGQFHRGVKHGLGSYYFRNGDRYAGEYFGDKVHGFGIYHFANGHCYEGSWHEGQRQGYGTYTFRNSEAKCGGWDAGSLKQPLSPLSEAVVEAVQASRKAARNAINLPRWDEQVNKAVVAANRSATAARVAAIKAVQNRMDGKFCDSDV 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4085920 4088461 - CmoCh09G007980.1 Cmo09g00798 388800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00798 429 Pfam MORN repeat 189 204 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 304 325 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 235 256 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 258 279 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 212 234 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 281 303 IPR003409 -
Cmo09g00798 429 Pfam MORN repeat 327 346 IPR003409 -
Cmo09g00798 429 Gene3D - 311 377 - -
Cmo09g00798 429 Gene3D - 171 218 - -
Cmo09g00798 429 Gene3D - 219 263 - -
Cmo09g00798 429 Gene3D - 264 310 - -
Cmo09g00798 429 SMART morn 233 254 IPR003409 -
Cmo09g00798 429 SMART morn 302 323 IPR003409 -
Cmo09g00798 429 SMART morn 210 231 IPR003409 -
Cmo09g00798 429 SMART morn 325 346 IPR003409 -
Cmo09g00798 429 SMART morn 279 300 IPR003409 -
Cmo09g00798 429 SMART morn 187 209 IPR003409 -
Cmo09g00798 429 SMART morn 256 277 IPR003409 -
Cmo09g00798 429 PANTHER RADIAL SPOKE HEAD 10 HOMOLOG B-LIKE 16 422 - -
Cmo09g00798 429 MobiDBLite consensus disorder prediction 1 64 - -
Cmo09g00798 429 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 183 288 - -
Cmo09g00798 429 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 16 422 - -
Cmo09g00798 429 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 276 357 - -
Cmo09g00798 429 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00798 - - - csv:101216886 728.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02460 Cmo09g00798 CCT
Cmo09g00798 Cmo15g00707 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00798 Cmo-Chr9:4085920 Cmo16g01146 Cmo-Chr16:8183021 1.22E-101 dispersed
Cmo01g01438 Cmo-Chr1:11231965 Cmo09g00798 Cmo-Chr9:4085920 0 wgd
Cmo15g00707 Cmo-Chr15:3437314 Cmo09g00798 Cmo-Chr9:4085920 0 wgd
Cmo04g02460 Cmo-Chr4:18192710 Cmo09g00798 Cmo-Chr9:4085920 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00798 Cmo_Chr09 FPKM 0.773067 0.0 3.253612 3.73641 3.121908 4.131627 2.798444 7.20791 6.534045 6.140602