Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00799 ATGGGGATCCAATGCACTTGGACACTCCAGCGGGTTCAATTTAGGCCTTCCGTTTTGTTCCGGTGTATTAATACTAATCCAAGACCAAATTCTCTTCGCTCATCTGTTTTCGCCACCATGTCCTCCGTTTCCACTGAAAAGAGCGTCGATTCTGACCAGAAAGGATCGAACAACGACACTCAGAAGCCATTGCAGGTTTCGAATCGGCTTGAAAAGTTCAAAACAACCATTTTCACTAGAATGAGTAACTTAGCGATCCAATATGGCGGAATAAACCTCGGCCAAGGCTTCCCGAACTTTGACGGTCCCGAATTTGTAAAGGAAGCAGCAATTCAAGCCATCAAGGACGGGAAAAATCAATACGCTCGTGGATATGGAGTGCCAGATTTGAACTTGGCCATTGCTGAGCGATTCAAGAAAGATACTGGACTTGTGGTCGACCCCGAGAAGGAAGTTACCGTTACCTCCGGGTGCACCGAGGCAATTGCTGCAACCATGCTTGGCTTAATAAATCCTGGTGATGAGGTGATCCTTTTTGCTCCTTTTTATGACTCTTATGAAGCCACTCTATCAATGGCTGGTGCCAAAATCAAATGCATCACGTTACGCCCTCCAGATTTTTCGATCCCTATAAATGAGCTCAGGTCTGCAATCTCAAAGGATACTCGAGCAATCCTTATGAACACGCCCCACAACCCAACGGGAAAAATGTTCACGAAGGATGAATTGAACGAGATTGCTTCTCTCTGCATCGAGAACGATGTGTTAGTTTTCTCTGATGAAGTTTATGACAAGTTATCTTTCGAAATGGACCACATCTCCATAGCCTCTCTTCCAGGAATGTACGAGCGCACCGTTACGATGAATTCATTAGGAAAAACATTCTCCCTCACCGGTTGGAAGATCGGGTGGGCGATCGCTCCACCTCACTTGACATGGGGCGTTCGACAGGCACACGCTTACCTTACTTTCGCTACCTCCACTCCAATGCAGTCAGCTGCTGCTACAGCTCTCCGAGCACCCGATTCTTACTACGAGGAGCTGAAGAAGGACTACATGGCAAAGAAAGCCATTTTAGTAGAGGGACTGAATGCAGTTGGGTTCAAGGTGTTTCCATCAAGCGGAACCTACTTTATCATCGTCGATCACACCCCTTTCGGGCTGAAGAACGACGTCGAGTTTTGCGAGTATCTGATCAAAGAAGTCGGCATTGTTGCTATTCCGACGAGCGTGTTCTACCTAAACCCAGAAGATGGGAAGAATCTAGTGAGATTTACATTCTGCAAAGATGAGAACACACTCAGGGCGGCGGTGGAGAAGATGAAGGAGAAGCTAGTTGGGAAGTAA 1347 46.84 MGIQCTWTLQRVQFRPSVLFRCINTNPRPNSLRSSVFATMSSVSTEKSVDSDQKGSNNDTQKPLQVSNRLEKFKTTIFTRMSNLAIQYGGINLGQGFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNLAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFSIPINELRSAISKDTRAILMNTPHNPTGKMFTKDELNEIASLCIENDVLVFSDEVYDKLSFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAYLTFATSTPMQSAAATALRAPDSYYEELKKDYMAKKAILVEGLNAVGFKVFPSSGTYFIIVDHTPFGLKNDVEFCEYLIKEVGIVAIPTSVFYLNPEDGKNLVRFTFCKDENTLRAAVEKMKEKLVGK 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4089673 4093811 - CmoCh09G007990.1 Cmo09g00799 388801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00799 448 SUPERFAMILY PLP-dependent transferases 65 443 IPR015424 -
Cmo09g00799 448 MobiDBLite consensus disorder prediction 47 66 - -
Cmo09g00799 448 Gene3D - 103 341 IPR015421 GO:0003824
Cmo09g00799 448 Pfam Aminotransferase class I and II 90 440 IPR004839 GO:0009058|GO:0030170
Cmo09g00799 448 PANTHER FI04487P 67 445 - -
Cmo09g00799 448 PANTHER FI04487P 67 445 - -
Cmo09g00799 448 Gene3D Aspartate Aminotransferase, domain 1 80 441 IPR015422 GO:0003824
Cmo09g00799 448 CDD AAT_like 91 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00799 K23977 GTK; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] - csv:101217124 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00092 Cmo-Chr2:480903 Cmo09g00799 Cmo-Chr9:4089673 2.21E-29 dispersed
Cmo02g00093 Cmo-Chr2:486999 Cmo09g00799 Cmo-Chr9:4089673 2.20E-27 dispersed
Cmo09g00799 Cmo-Chr9:4089673 Cmo17g00799 Cmo-Chr17:7657176 8.37E-14 dispersed
Cmo04g00857 Cmo-Chr4:4278073 Cmo09g00799 Cmo-Chr9:4089673 1.60E-50 transposed
Cmo06g01681 Cmo-Chr6:11610638 Cmo09g00799 Cmo-Chr9:4089673 9.09E-14 transposed
Cmo09g01152 Cmo-Chr9:7192181 Cmo09g00799 Cmo-Chr9:4089673 1.09E-13 transposed
Cmo17g01024 Cmo-Chr17:8757493 Cmo09g00799 Cmo-Chr9:4089673 2.40E-97 transposed
Cmo01g01282 Cmo-Chr1:10226696 Cmo09g00799 Cmo-Chr9:4089673 1.03E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g293 . . . Bda03g00529 . . . Bma01g02642 . . . Cma09g00806 . . . Cpe06g00641 . . . . . . . . . . . . . . . Cone4ag1388 Cone7ag1547 . . Lsi04g02378 Csa04g01815 . . . . . . . . . . . . Cmo09g00799 . . . Car09g00722 . . Bhi09g02655 . . . . . . Cla11g01524 Cam11g1584 Cec11g1613 Cco11g1614 Clacu11g1741 Cmu11g1559 Cre11g1975 . . Chy07g00661 Cme07g00869
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007070 1 2 2 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00799 Cmo_Chr09 FPKM 246.963654 278.906464 110.041733 110.909813 5.843009 4.932857 5.444204 5.152593 5.291172 4.42685