Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00807 ATGGATTTCCAGGATGATGGCTTTGAGGGATCGCCGAACGAAGACATTATCTTTAAGGAAATTTTCTTTGGGAACGGTGCTAGTCGTTCCAATGAGAGGTGTCCTCGTGAGGCATTTGGTTATGAACATGGGCTTTGTAAGATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCGACGGTGTCCAGTCATTTATACTCGAGGAATATAAAGCTTGATGAATGTTACAATGCTACTGAGAATGTTAGGACCAGTTCTGCTGCGAATAGCTTTCCATGCAAATTGACTCCAGTGGAAGGAAATGATGAGAATGCTTGTGCCAAACGAATGAAACGTTCAACTGATGAACGTTCTGATTCTGTACCTGATCTAGTTATGGTTATGAAATCATCAGATATTATCGGAGAACCTGTTTCCACTAGTTGCTGTCCAGCTGAGGTTTGTGATTCTGAATCATTTACGTTTCACATTGTAGAATCGTCTAGACGGGGTATTATTTCAAGTTGCTATCTGCTAAAGCACTTTGTAGAAAGAGATAGTAACCGGGGTGAACCTGATGCCTCCAAACGAACATCGTTAAATTTAGAAGGTAATGATGAACCGAGTATGGTGGATAAAGTTGGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTTGCAAGTCCTTCTGATACACTCAACGAGCAGTTCGGATCTCCACTACAACTGGTGGTAGGACAAATGAAACTTCAATGTCCAGAACTGGACACTTCGTTGATGACAGATTTGAAAAGAGATCCCCGTCCTCTTCTCCACTATCATGTCGTTCACCTATTTATTGCAGCTGGATGGTCTATCGAAAGGGTCAAAAGACCTTGCAGGCGTTATATGGAAACAGTTTATAGATCACCCCAGGGAAAGACGATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTCCTCTTTGCTGATAGATGTAGTTTCGTGAAGGAAGTTGGCAGCAAGGAATGGACTGGCATTCATCAATTCTTGTTTGATCTTTCTGACACGTTGTTACAGGTCAGGAAGGAAATGAATCAATTAGGAGGCACAACTTCATTGGCTCATTGCTGGGTTATTCTCGATCCCTATGTGGTAGTTGTGTTCATTTACCGAAAGATCGGTACACTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTTGTGACATTAACAAATGAAGATAGTAGTATTTGTAGTCTATCTGCTGACAAAAATGCATCCCCGCTACGTGAACAATCACCATCTGCCAAGAGTGCATTGACAGAAGTCGTGTTAAAAGATTTCGATGGAGGCAATTGTGCTTTTGATGAACAAGCCTGTGATACAATTTTCTCCAATTACTATGCGCAAACAGAAGATGCAACAATGAAGCTTTCGACAAGGGTGTCTAATTATGTCCCTAGGTTGGTGAATGGTCCGAATTGCACGGGCAGTCATTGCAATGAACCTGGATGCAAGATAGACAGTGAGGATATAACTTGCAAACCTAGATGTCTGGCGGACTGTCCTGTTCCATCTGGAAATTCAGACAACGTTGTCAGAATTTCTGGCACTACATCTCCTGATGAGGATAGTACATTGCATTGTTTGGATGAACACAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAATTGGTGAAAAATGTACTAACATGTTCCCTAGGAGAAGAAAAAAAAGTCGAAGTCCCACTCGATGATAAGGCGGAAAATAGTTTGGAAGAATCTCTGAATGACTATTCGAACTATACAAGTGATGACCTATCCCATTCTTGTGCCTCGGGGGTTGTAGAGAAGTCGACACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAAAGTTCAAAACCGAGAATAAAGTTTCTGCCATACATTCTACTTCGAAGAAGAAAGGGCGTCGAAAGTGTAAAAAGATATCTGAAATTAACCCTACCTTGCCATCGCAGATCGATATTGTGAGTGCGACTCCAGGAAAGAAAACTGATTGCTCTCAGTTGGACATGATAGAAGACCAAAAGTGCCATATAGCTGATACTAAAAACGTGGACAGTCACGAGAAGAGCTCGTTTCTCAGTCCTATTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGAAATTTGACAGTCTTAGAGGTTCAAAAACCAGAAAGAAGAAATTGAATGAATGTCAAATTGAAGATGACGACCTATTAGTTTCGGCCATAATTAGAAACAAAGATGTCAACTCAAGCGCTATCGGATTTTCCCATATAAGAAAATACTTAAAATCTAGAGCAAACATGAACTGCAAAAGTCAAAAGAGGAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCAATCGGGGCTAGAACAGTATTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGATATAATCCAATACCAAAGCCCCAAGGATGACAGTGTGGTTAAATATGGTAGAATCACCGGAGACGGCATCGTCTGCAATTGCTGCAGTGAGCTACTCACAATATCTGAATTTAAACATCACGCTGGTTTCAAATTTAATCGCCCGTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGACAAGTAAGACCCGAACAGTTCAAGTCGATGAAGATGATCGAAATGATGACTCATGTGGGATTTGTGGCGATGGTGGAGAGCTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGTTTAAACTGTACTTGCCGGACATGTGGTGGTCTGGTGAATTATGAAGAGACTTCAAGTTCTTCTGATGCACTAAAATGTTCCCAGTGCGAGCAAAAGTATCATGGGCAATGCCTGAAACAAAAAGACATCAATCCGGGAGTAGGATCTCATATTTGGTTCTGTAGCGCGAGTTGCCAGACGATTTACGCTGGTCTTCAATCACGACTTGGATTGATTAATCAGTGTGCAAACGGGTTTTCATGGATGCTTCTTAGATGCATTCATAATGAACAGAAAATTCTGTCTACCTCACGCTTAGCTATGATGGCAGAGTGCAACTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTATCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGACTCAACTTTCATGGATTTTACACCGTAATACTAGAGAAAGATGATGTGCTGCTATGTGTAGCTTCTATCAGGGTACATGGATCAGAACTGGCCGAGATGCCCCTGATTGCAACGTGTAGTAAATATCGTCGCCAGGGAATGTGTAGGCGCCTACTGAATGCTATAGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTAGAGACATGGACTGAAGGTTTTGGGTTCATACCTGTGGAAGATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTCCCTGGAACATTACTACTAAAAAAGGCCTTATATGTAAGTGGCCAAAATACAGAGACAACACAAGGAATTCGTTCGAAACAAGAATGTGATTCTGAAAAAGCATGTTCCAGAACGGAAATGAAACGTTTAACGTTTGAAGAATTGCAAGAACATGATGGTGAAAAGACGATGGACGATCGCGAAGGGAATCCAGCTCCGATGAGTCCAGCGACAACAACAAATGGAATGGATACTTGTTCAGGACAGAAAGCTATTCAGTCTGTACAAGAACAAGAACCTGATGGAAAGTGTTGCACTGACGAAGTTGGTGCTGCAAGTGAAACACACATCCACGAGGGGAACGAGTCGTTAGAAGTAGAAGTCGTTGGCACGGAACGTGACACGTTCAGCTTACAGAAGGAAAGAGCTGGGATGGGGTTCGTGCAGTCGGTATGA 4089 41.94 MDFQDDGFEGSPNEDIIFKEIFFGNGASRSNERCPREAFGYEHGLCKINDASLCSSSELSTVSSHLYSRNIKLDECYNATENVRTSSAANSFPCKLTPVEGNDENACAKRMKRSTDERSDSVPDLVMVMKSSDIIGEPVSTSCCPAEVCDSESFTFHIVESSRRGIISSCYLLKHFVERDSNRGEPDASKRTSLNLEGNDEPSMVDKVGASPVSQESSMTRLLVASPSDTLNEQFGSPLQLVVGQMKLQCPELDTSLMTDLKRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETVYRSPQGKTIREFSKAWRVCGELLFADRCSFVKEVGSKEWTGIHQFLFDLSDTLLQVRKEMNQLGGTTSLAHCWVILDPYVVVVFIYRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLTNEDSSICSLSADKNASPLREQSPSAKSALTEVVLKDFDGGNCAFDEQACDTIFSNYYAQTEDATMKLSTRVSNYVPRLVNGPNCTGSHCNEPGCKIDSEDITCKPRCLADCPVPSGNSDNVVRISGTTSPDEDSTLHCLDEHSSENQVEKPNELVKNVLTCSLGEEKKVEVPLDDKAENSLEESLNDYSNYTSDDLSHSCASGVVEKSTQNEEGGLHFSASKFKTENKVSAIHSTSKKKGRRKCKKISEINPTLPSQIDIVSATPGKKTDCSQLDMIEDQKCHIADTKNVDSHEKSSFLSPISCHSERKGSKFKKKFDSLRGSKTRKKKLNECQIEDDDLLVSAIIRNKDVNSSAIGFSHIRKYLKSRANMNCKSQKRSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIVCNCCSELLTISEFKHHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRTSKTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRTCGGLVNYEETSSSSDALKCSQCEQKYHGQCLKQKDINPGVGSHIWFCSASCQTIYAGLQSRLGLINQCANGFSWMLLRCIHNEQKILSTSRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLNFHGFYTVILEKDDVLLCVASIRVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFIPVEDDEKQSLHRFNLMVFPGTLLLKKALYVSGQNTETTQGIRSKQECDSEKACSRTEMKRLTFEELQEHDGEKTMDDREGNPAPMSPATTTNGMDTCSGQKAIQSVQEQEPDGKCCTDEVGAASETHIHEGNESLEVEVVGTERDTFSLQKERAGMGFVQSV 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4133852 4142077 + CmoCh09G008070.1 Cmo09g00807 388809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00807 1362 Pfam Tify domain binding domain 854 904 IPR032308 -
Cmo09g00807 1362 MobiDBLite consensus disorder prediction 1267 1291 - -
Cmo09g00807 1362 Pfam PHD-finger 932 973 IPR019787 -
Cmo09g00807 1362 MobiDBLite consensus disorder prediction 181 214 - -
Cmo09g00807 1362 SMART PHD_3 973 1027 IPR001965 -
Cmo09g00807 1362 SMART PHD_3 931 972 IPR001965 -
Cmo09g00807 1362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 922 975 IPR013083 -
Cmo09g00807 1362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1028 IPR013083 -
Cmo09g00807 1362 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1068 1229 IPR000182 GO:0016407
Cmo09g00807 1362 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1118 1204 IPR016181 -
Cmo09g00807 1362 Gene3D - 1101 1216 - -
Cmo09g00807 1362 PANTHER INCREASED DNA METHYLATION 1 2 1259 IPR031086 -
Cmo09g00807 1362 PANTHER PHD FINGER FAMILY PROTEIN 2 1259 - -
Cmo09g00807 1362 ProSiteProfiles Zinc finger PHD-type profile. 929 974 IPR019787 -
Cmo09g00807 1362 CDD NAT_SF 1123 1183 - -
Cmo09g00807 1362 SUPERFAMILY FYVE/PHD zinc finger 910 972 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00807 - - - bhj:120086236 2246.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01297 Cmo09g00807 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00335 Cmo-Chr8:2071298 Cmo09g00807 Cmo-Chr9:4133852 9.41E-126 dispersed
Cmo08g01120 Cmo-Chr8:7135406 Cmo09g00807 Cmo-Chr9:4133852 2.12E-123 dispersed
Cmo09g00807 Cmo-Chr9:4133852 Cmo17g01163 Cmo-Chr17:9392299 5.04E-123 dispersed
Cmo01g01297 Cmo-Chr1:10302045 Cmo09g00807 Cmo-Chr9:4133852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10372 PF16135 TDBD 4.70E-16 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00807 Cmo_Chr09 FPKM 5.964771 5.540757 4.701026 4.538498 8.561173 10.686063 10.355112 3.936561 3.629864 4.622038