Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00811 ATGGCGACAAGTTTTCATCTTCTTCTTCCCCCTCTCTGTTTCCTGCTCTGCACTGTTCTTCTCGCCGCCATAGCCACAGAAGCTCAAGTTCCTGCAAATGCCACCTTCCATTTCGTAAACCAAGGCGAATTCGGCGACCGAATCATTGAATACGACGCCAGCTACCGCGTAATTCGAAACCACGTGTACACCTTCTACACATTCCCCTTCCGCCTCTGTTTTTACAACACCACCCCTGATTCCTTCATTTTCGCCATTAGAGCTGGAATCCCCAACGACGAGAGCTTAATGCGATGGGTTTGGGACGCCAATCGCAACGACCCAGTTCGTGAAAACGCCACCCTCACCTTTGGCCGCGACGGAAACTTCGTCCTAGCCGACGTCGACGGCCGTGTCGTCTGGCAAACCAACACCAAAAACAGAGGAGTCACCGGCATCAAAATGCTCCCTAATGGAAACTTAATCCTCCATGACAAGAACGGGAAATTCATCTGGCAGAGCTTTGATTACCCTACTGATACTCTGTTAGTCGGTCAATCGATTCGAATCGGCGGCCGGAATAAATTAATTAGCCGGAAATCCGAAATCGACGGCTCTGATGGCCCTTACAGCCTTGTTCTAGATCGAACAGGGCTCACAATGTTTCTTTCCCACGACGGTCAGCTTTTAACCTACGGCGGTTGGCCGGGGACGGATCATGGAAGCAGAGTAACATTCGCCGCCGAACCAGAGAATGACAACGCCACCGCGTACGAGCTTCTTCTTTTAGTAAATCAGGACACCCCACGGCGGCGATTGTTACAAGTCCGACCAATTGGAAGCGGCGGAGCGTTGAATTTGAACAAATTGAACTACAATGCGACGTACTCGTTTCTCCGGCTAAGTCACGACGGGAATTTGAAGGCATTCACGTACTACGATAAAGTGAGTTACTTGAAATGGGAAGAGAGCTTTGCGTTTTTTTCGAGCTATTTCATAAGGGAATGTGCTCTGCCGAGCAAATGTGGAGCTTATGGGTACTGCAACAGGGGAATGTGTGTGGCGTGTCCGAGCCCAAAAGGGCTTTTGGGGTGGAGCGAGAGCTGTGCGCCGCCGAAGACGCCGCCGTGCAGCGGCGGAAAAGGGAAATTTGGGTACTATAAGATAGTGGGGGTGGAGCATTTTTTGAACCCGTACAAGGAGGACGGGGAAGGGCCGATTAAGGTGGGGGATTGCAGAGCCAAATGTGATAGAGATTGTAAGTGTTCAGGGTTTATCTATAAGGAGTATAGCTCAAAATGCTTGAGGGTTCCATTGTTGGGAACTTTGATTAAGGATGTTAATTCGTCCTCGGTGGGTTATATTAAGTATTCGATTTAG 1359 49.74 MATSFHLLLPPLCFLLCTVLLAAIATEAQVPANATFHFVNQGEFGDRIIEYDASYRVIRNHVYTFYTFPFRLCFYNTTPDSFIFAIRAGIPNDESLMRWVWDANRNDPVRENATLTFGRDGNFVLADVDGRVVWQTNTKNRGVTGIKMLPNGNLILHDKNGKFIWQSFDYPTDTLLVGQSIRIGGRNKLISRKSEIDGSDGPYSLVLDRTGLTMFLSHDGQLLTYGGWPGTDHGSRVTFAAEPENDNATAYELLLLVNQDTPRRRLLQVRPIGSGGALNLNKLNYNATYSFLRLSHDGNLKAFTYYDKVSYLKWEESFAFFSSYFIRECALPSKCGAYGYCNRGMCVACPSPKGLLGWSESCAPPKTPPCSGGKGKFGYYKIVGVEHFLNPYKEDGEGPIKVGDCRAKCDRDCKCSGFIYKEYSSKCLRVPLLGTLIKDVNSSSVGYIKYSI 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4171305 4172663 - CmoCh09G008110.1 Cmo09g00811 388813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00811 452 CDD B_lectin 68 171 IPR001480 -
Cmo09g00811 452 PIRSF SLG 5 452 IPR035446 -
Cmo09g00811 452 PANTHER CURCULIN-LIKE (MANNOSE-BINDING) LECTIN FAMILY PROTEIN-RELATED 12 451 - -
Cmo09g00811 452 Pfam D-mannose binding lectin 100 186 IPR001480 -
Cmo09g00811 452 ProSiteProfiles Bulb-type lectin domain profile. 48 169 IPR001480 -
Cmo09g00811 452 PANTHER - 12 451 - -
Cmo09g00811 452 Gene3D - 70 168 IPR036426 -
Cmo09g00811 452 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 221 IPR036426 -
Cmo09g00811 452 SMART blect_4 49 171 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00811 - - - bhj:120085141 858.981
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00811 Cmo16g00478 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00811 Cmo-Chr9:4171305 Cmo16g00478 Cmo-Chr16:2288991 3.02E-131 dispersed
Cmo09g00811 Cmo-Chr9:4171305 Cmo18g00314 Cmo-Chr18:2010095 5.13E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012283 1 1 1 0 2 0 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 2 1 1 1 1 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00811 Cmo_Chr09 FPKM 9.103844 9.640298 6.236073 6.652221 15.210018 15.203263 15.854949 7.819633 7.408377 7.730367