Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00812 ATGCCGAACCGGAATGTCGAGAAGATGGCATCGATTGATGCGCAGCTTCGGCTTTTAGCACCAGCTAGAGTGAGTGATGATGATAAATTGGTGGAGTATGATGCGTTGTTGCTGGATCGGTTCCTTGATATTCTTCAGGATTTGCACGGGGAGGATCTGAAGGAAACTGTGCAAGAATGTTATGAACTTTCTGCTGAATATGAAGGGAAACACGATCCGAAGAAACTCGAGGAGCTCGGAAATGTGCTGACTAGTTTAGATCCAGGGGACTCTATTGTCATTGCCAAATCTTTTTCCCATATGCTTAATTTGGCTAACTTGGCCGAGGAGGTTCAGATTGCTTATCGTCGAAGGATCAAACTGAAGAAGGGAGTTTTTGCTGATGAGAACTCTGCAACCACGGAATCTGACATCGAAGAAACTCTGAAGAAGCTTGTGGGGAAACTGAACAAGTCCCCTCAAGAAGTTTTCGATGCCTTGAAGAACCAGACTATAGATTTGGTCTTAACTGCTCATCCGACTCAATCAGTTCGTAGATCTTTGCTTCAGAAGCATGCAAGGATACGGGACTGTTTAGTTCAGTTGTACGCCAAAGACATTACTCCCGATGACAAGCAAGAACTTGATGAGGCACTTCAGAGAGAGATTCAAGCTGCATTTCGTACTGATGAAATCCGTAGAACTCCTCCTACACCACAAGATGAAATGAGGGCAGGAATGAGCTACTTCCACGAGACAATTTGGAAGGGTGTTCCTAAATTTCTGCGCCGTGTTGATACTGCTTTAAAAAACATAGGGATCGATGAACGTGTTCCTTATAATGCACCACTAATTCAGTTTTCATCTTGGATGGGTGGTGACCGTGATGGTAATCCCAGGGTGACACCGGAGGTTACAAGGGACGTCTGTCTTCTTGCTAGAATGATGGCTGCTAATCTGTACTACTCACAGATTGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCAGTAGTGAGCTTCGTGAGCGTGCAGACGTGCTTCATAATTCATCAAGGAGAGATGCAAAACACTACATAGAATTTTGGAAGCAAGTTCCTGCCAATGAACCCTACCGAGTGATTCTTGGCGACGTAAGGGACAAGCTTTATCAGACGCGTGAGCGTTCTCGCCATTTGTTAGCTAATGGATATTCGGACATCCCAGAGGATGCGACTTTTACAAATGTTGAGCAGTTCTTGGAACCTCTTGAACTATGCTACAGATCCCTCTGTGCTTGTGGTGATCGACCGATTGCTGATGGCACCCTTCTTGATTTTTTGAGGCAAGTGTCCACTTTTGGCTTGTCACTTGTAAGACTTGACATCAGGCAGGAGTCGGATCGTCACACTGACGTTTTGGAAGCCATTACTCAGCATTTGGATATTGGTTCCTACAAAGAATGGTCCGAGAAACAGCGACAAGAATGGCTTCTATCGGAACTTAGTGGCAAACGTCCTCTTTTTGGTCCTGATCTTCCTACAACTGAAGAAATATCTGATGTTTTGAACACGTTCCATGTCATAGCGGAACTTCCTTCTGATAACTTCGGTGCATATATCATTTCCATGGCCACTGCTCCGTCTGATGTTTTAGCAGTTGAGCTATTGCAGCGTGAGTGCCATGTTACGCAACCGTTGAGAGTTGTTCCCCTGTTCGAGAAGCTTGCAGATTTGGAGGCTGCACCAGCAGCCCTTGCTCGCCTCTTCTCGATAGATTGGTACAAAGACCGGATTAACGGAAAGCAAGAAGTCATGATCGGCTACTCGGATTCTGGTAAAGATGCTGGACGGTTCTCTGCGGCCTGGCAGTTGTACAAGGCTCAAGAGGAGCTTATAAAGGTTGCAAAGCAATATGGTGTGAAGCTAACTATGTTTCACGGTCGGGGTGGCACCGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATTTTGTCCCAACCACCCGAGACAATTCATGGTTCGCTCCGTGTAACAGTACAGGGGGAAGTTATTGAGCAGTCCTTTGGAGAGGAGCACTTGTGTTTTCGAACACTCCAACGTTTCACTGCTGCAACGCTTGAGCACGGAATGCACCCTCCAGTTTCACCAAAACCTGAATGGCGTACACTGATGGACGAAATGGCTGTTGTTGCAACAGAAGAATACCGTTCCATCGTCTTCCAAGAACCACGATTTGTCGAATATTTCCGCCTTGCAACACCTGAGCTCGAGTATGGTAGGATGAATATTGGAAGCCGTCCATCAAAACGAAAGCCAAGCGGGGGTATCGAGTCACTTCGTGCAATCCCATGGATCTTTGCATGGACACAGACGCGATTTCATCTTCCAGTTTGGTTAGGCTTTGGAGCAGCATTCAAGCATATTATTCAGAAAGATGTTAAGAACCTTCAAATGTTGCAGGAGATGTACAACGAATGGCCCTTCTTTAGGGTCACCATTGATTTGGTCGAAATGGTGTTCGCTAAAGGAGACCCTGGCATCGCAGCGTTGTACGACAAGCTCCTAGTTTCGGAGGACCTCTGGCCATTCGGACAGCGCTTGAGAGCCAACTATGAAGAAACAAAGAGCCTTCTACTGCAGATTGCTGGACACAAAGATCTTCTTGAAGGGGATCCTTACTTGAAGCAAAGACTCCGTCTCCGTGATTCATACATCACGACTCTGAACGCTTGCCAAGCATACACGCTGAAACGAATCCGTGATCCGAACTACCATGTGACAGTGCGTCCACACATTTCAAGGGAAATAATGGAAGCAAGCAAATCAGCAGACGAACTGGTGAAGCTGAACCCGAAGAGCGAGTACGCACCTGGGCTAGAGGACACTCTGATCTTGACCATGAAGGGTATTGCTGCTGGAATGCAGAACACTGGTTAA 2898 46.55 MPNRNVEKMASIDAQLRLLAPARVSDDDKLVEYDALLLDRFLDILQDLHGEDLKETVQECYELSAEYEGKHDPKKLEELGNVLTSLDPGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLKKGVFADENSATTESDIEETLKKLVGKLNKSPQEVFDALKNQTIDLVLTAHPTQSVRRSLLQKHARIRDCLVQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGIDERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCSSELRERADVLHNSSRRDAKHYIEFWKQVPANEPYRVILGDVRDKLYQTRERSRHLLANGYSDIPEDATFTNVEQFLEPLELCYRSLCACGDRPIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLEAITQHLDIGSYKEWSEKQRQEWLLSELSGKRPLFGPDLPTTEEISDVLNTFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHVTQPLRVVPLFEKLADLEAAPAALARLFSIDWYKDRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRTLMDEMAVVATEEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHIIQKDVKNLQMLQEMYNEWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEDLWPFGQRLRANYEETKSLLLQIAGHKDLLEGDPYLKQRLRLRDSYITTLNACQAYTLKRIRDPNYHVTVRPHISREIMEASKSADELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4179053 4183696 + CmoCh09G008120.1 Cmo09g00812 388814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00812 965 Pfam Phosphoenolpyruvate carboxylase 36 965 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Cmo09g00812 965 Gene3D Phosphoenolpyruvate/pyruvate domain 308 443 - -
Cmo09g00812 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 965 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cmo09g00812 965 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 965 IPR015813 GO:0003824
Cmo09g00812 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 3 965 - -
Cmo09g00812 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00812 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101208329 1851.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01301 Cmo09g00812 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00812 Cmo-Chr9:4179053 Cmo19g01059 Cmo-Chr19:9192440 0 dispersed
Cmo01g01301 Cmo-Chr1:10339801 Cmo09g00812 Cmo-Chr9:4179053 0 wgd
Cmo11g01968 Cmo-Chr11:13540738 Cmo09g00812 Cmo-Chr9:4179053 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g116 Blo03g00699 . . . Bpe09g00257 Bpe08g00996 . Bma13g00930 . . Cma01g01246 Cma09g00817 Car01g01067 Car09g00734 Sed05g2521 Cpe06g00652 . Bhi09g03506 Tan01g4327 Cmetu07g1552 . . Mch11g1013 . Cla11g01713 Cam11g1782 Cec11g1803 Cco11g1808 Clacu11g1941 Cmu11g1752 Cre11g2160 . . . . Lsi04g02015 . . . . . . . Bpe11g00450 . . Bma14g00266 . Cmo01g01301 Cmo09g00812 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000971 4 3 4 5 4 1 3 2 1 2 2 2 4 2 1 4 2 4 4 2 2 2 2 2 2 2 2 5 3 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00812 Cmo_Chr09 FPKM 5.457143 0.0 6.442576 0.0 11.083652 0.0 11.205976 0.0 0.0 6.735996