Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00824 ATGGGAAAGCTTCACTTTCTGTTTTCTTTCTTGTTGTTTGCTGCCATGGTTTATGGAAGGCATGAAACAATGGTTGATGGTAAACAGGGCAGGATAGGAGCCATTGTAGACATGAGTTCTAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAGGATTTTAACTCCTTGAGCAATCGAAATTTCAGTCTCGTCGTTAGAGATTCCAGAAGTGATCCCAATCTAGCAGCTCTAGCTGCTAAAGATCTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGGCCCCAAACCTGGGAAGTGGCATCCGTAGTTTCTGAGGTTGGAAATGAGGAGCAGATTCCGGTATTAGCGTTAGCTAACGAAATACCGAAGTGGGCAAACGAGAGGTTCAAATTCTTGGTCCAAGCTTCCCCCTCCCAGTTAAATCAAATGAGAGCTATAGCTGGTATCATCGGTTCATGGGATTGGCGCCTAGTCAATGTTATATATGAAGATAGTGATTTCTCAACCACTGAAATATTTCCTCATCTTGTACATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAATTTGATTCTGATTTATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCTAGCAGAATTTTTGTAGTTCATTTGCCATTCAAGTTGGCACTGCGTTTATTCGAGACAGCAAAAGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACCGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTGTACTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCGATATCATGACTTTTATCTTCGGTTTTGTCGAAGGTTTAGATTAGAGCATTTTGATGAGGACAACAACGAGCCCGGTATCTTTGCAGTACAGGCTTATGATGCTGCAACGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGCAATGATCACTTGTTAGAAAAAATAGAGCTCACTGACTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAATTGGCCCCAGCTGATACTTTTCAGATTATCAATACCTTGGGAAGGAGTTATATGGAACTAGGCTTCTGGTCTGATACATTAGGATTCTCGCAAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTAGCCAAGTGTTTTGGCCAGGTGGATCTTCTGAAACTCCAAAGGGATGGGTCGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAACTGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCATAAGGCCTTCAATGGACTTGCAGTTGATCTGTTTAAAGAAACATTAGGCATCCTGCACGCCCCTCCGTCGTACCAGTTCTATCATTTCGATGGCTCATATGATGATTTGGTGAATCAAATCTACTTAAAGAACTTTGATGCAGCTATAGGTGATATCGCCATAATATCACGACGCTATGAACATGCCGAGTTTACACATCCTTACTCTGAAGCAGGACTGGTGATGATAGTTCCTACCACAAATGACACAAGCAACAAATCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACCGTCTACAATGGCTTTGTCGTGTGGTTCATAGAACGAGGTCACTATCCTGAACATGATGGTTCAATGCTTGATGAAGCTGGAGCCATGTTTTTCTCATCCTTCACCACTCTCTTCTCCTTGCACGGCAATAGGCTGCACAGTAACTTATCACGGATGGCTATGGTGGCGTGGCTATTCATGGCACTTGTGGTAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCACTGTTCAAAAGTTCAAGGCGACTATATCGGACATTGAGACTCTCCAGAAAATGAATGCATATGTGGGAAACGGCAGAGGAACCTTTGTCAAAAGGTATTTGGAAGAAGTTTTGAAGTTTCCTACCAAAACTATAAAAAACTACACTGCCCAAAACGATTTAGCTGAGGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTATGCAAAACTATTCCTCGCAAGATTTTGCAATGAATTCATGATTTCTGGACCAACCTACCATGTTGGAGGATTTGGATTTGCGTTTCGGAGAGGCTCTCCGCTGTTACACGACGTTAACAAAGCACTGCTTAAGGTATTTGAAAGTGGGAAGTATAGAGAGCTGGAAGAAAGCATGATTGCTAGGGAGAAATGTGAGGATAGGGAAGCCAAAGTGAAAAGTTCAAGCCTCAGCCCCAACAGCTTCTTTTTACTATTTGTATTGAGTGGAGGAGTATCAACATTAGCATTGACATTGTACACTATCAGTGTTCATAAATCATTTCTTCAACAGACCGTTCTTTGGAGGTTAATGTTAGCTGTAATCAAGAACTGGGGAAATCACAGGAGGGAATTTTCTCGACAACCAAACGACGTGCTGCTAACCGTCCCAAAGATCTTCCCAAACGCCACAAACCTGCAAATTCAGTTCCCTGCTCTGTTTTCTTTCTTCTTGGTTGCTTTGGTAGTTTCTTGGGGGCATGAAACTGAAGGGAACATGAACTTGACGATGGATGATAGTGGGAAGGGCAGAATTGGGGTCATTGTAGACGAGAGTTCTAGGATTGGTAAGGAAGAGATTTTGGCTATGCAGATGGCTGTTGAAGATTTGAACTCCTCCAGGAATCAGAGCTTTAGTCTTGTTATCAGAGACTACAAAAGTGCTCCCAATCTTGCAGCTCTTGCAGCTAAAGAACTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGACCTCAAACCTGGGAAGCGACATCCATAGTTTCCGAGGTCGAAAATGAGAAGCAGACTCCGGTTCTAACATTAGCTAATGAAATACCAAAGTGGGCAAATGAGAGGTTCAAATTCTTGGTCCAAGCTTCCCCCTCCCAGTTAAATCAAATGAGAGCTATAGCTGGTATCATCGGTTCATGGGATTGGCACCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGAAATATTTCCTCATCTTGTTCATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTAGTCTCTCACAATTTGATTCTGATTTATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAGTTTTTGTAGTTCATTTGCCATTCAAGTTGGCACTGCGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGGGAAATGGCTACGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGCTTCTATCTTCTCTGTATTACAAGGAGTTGTTGGAGTCAAACGCTTCTTCCCTGGAGACAAGCCTCCATTTCATGAGTTTCATCTTCGGTTCCGAAGACGGTTTAGATTAGAGCATTCTGATGAGGACGAGCACGAGCCCGGTATCTATGCAGTACAGGCTTATGATGCTGCAACGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGTAATGCCTTGTTGGAACAAATAAAGCTCACTGCCTTTCAAGGACTCAGTGGAATGATTCAGTTCAAGGACAGAAAGTTAGCCCCAGCTGATACATTTCAGATTATCAATATCATGGGAAGGGGTTATAGGGAACTCGGCTTCTGGTCTGATAAATCAGGGTTCTCACGAGAGTTGAGGGAAAATTCGTCGTCTAACTCGTCGATGAAGGATCTTAGCCAAGTGTTTTGGCCGGGTGGTTCTTCGGAAACTCCAAAGGGATGGGTTGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAACTGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCCTAAGGGAAACAATTTAACCTTCACTGGACTTGCAATTGATCTGTTTAAAGAAACCATACACAGCCTGCACGTCCCTCCGTCGTACGAGTTCTATCGTTTCAATGGCTCATATGATGATTTGGTGAATGAAATCTACTTAAAGAACTTCGATGCAGCTGTCGGTGATATCGCCATAATATCACGACGCTACGAACACGCCGACTTTACACATCCTTACTCTGAAGCAGGACTGGTGATGATAGTTCCTACCAGAAAAGACAAAAGCAACAAATCATTGTTGTTCACAAAGCCCTTTACATTAACCATGTGGATTGCAATTGCTATGATAAATGCCTACAATGGCTTTGTAGTCTGGTTCATAGAACGAAGTCGCTATCCATGTCATGACGGTTCGATGTTTAATCACGCTGGCACCATGCTTTGCTCATCCTTCACGACTCTCTTCTCACTACATGGTAACATGCTTCATAGTAACCTGTCACGGATGACCATGGTGGTTTGGTTGTTTATGGCGCTCGTGATAACTCAAATATATACCGCAAATCTTACAAGCATGCTCACTATTCAAAGACTCGAACCGACTATATCGAATATCGAAACGCTCCAAAGGGCAAACGCTTTAGTCGGATATGGTAAAGGATCCTTTGTCAAAAGATATTTGGAAGAAGTTTTACACTTCCGACCTGAAAACATAAAGAACTACTCCACACCTGAAGATCTTGCTGAAGCTCTCAGAAACCAGGAGATATCAGCTGCTTTTCTTGAAGTCCCTTTTGTGAAAATATTCCTTGCAAGATTTTGCAGGGAGTTCATGATTTCTGGGCCAACCTACAAAGTTGGAGGATTTGGATTTGCGTTTCCACGAGGCTCGCCGTTGTTAACGGATATCAACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTTCAAAGCTTTGGAAGATAGCATGATTGGTAATGAGACATGTGAGGATGATGATGCAAAGGAGGAAGGTTCACGCCTCAGCTCCAACAGCTTCTTTATACTGTTTGTATTGAGTGGAGGAGTATCAACAGTAGCTCTCACATTGTTCATCTTTAATGCCCATAGCTCTAGTTTTCATCAGAACGCTATCTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAGAGCATAGGAGGTCGCCTTCTCGACGAGTATGCGACGAACTGCAAACGACGACTGTCTCGTATAACTTCGCACACAACACGAACTTGCGAATTCAGGTCTAG 5193 42.75 MGKLHFLFSFLLFAAMVYGRHETMVDGKQGRIGAIVDMSSRIGKEEILAMQMAIEDFNSLSNRNFSLVVRDSRSDPNLAALAAKDLISMQRVQVLIGPQTWEVASVVSEVGNEEQIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWRLVNVIYEDSDFSTTEIFPHLVHALKDVGAEVSEFVGLSQFDSDLFTKELERLRRGSSRIFVVHLPFKLALRLFETAKEMGMMGKDYVWITTDTFTSLAHSFNVSINSVLQGVVGVKSYFPERNPRYHDFYLRFCRRFRLEHFDEDNNEPGIFAVQAYDAATTAAMAMSEIQEKGNDHLLEKIELTDFQGLGGKIQFKDRKLAPADTFQIINTLGRSYMELGFWSDTLGFSQELRENSSSSSSMKDLSQVFWPGGSSETPKGWVVPTDANPLRIGVPTGSMFKQYVQVEEDHKAFNGLAVDLFKETLGILHAPPSYQFYHFDGSYDDLVNQIYLKNFDAAIGDIAIISRRYEHAEFTHPYSEAGLVMIVPTTNDTSNKSLLFTKPFTVTMWILIAVVTVYNGFVVWFIERGHYPEHDGSMLDEAGAMFFSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVVTQTYTANLASMLTVQKFKATISDIETLQKMNAYVGNGRGTFVKRYLEEVLKFPTKTIKNYTAQNDLAEALRNQEIAAAFLEVPYAKLFLARFCNEFMISGPTYHVGGFGFAFRRGSPLLHDVNKALLKVFESGKYRELEESMIAREKCEDREAKVKSSSLSPNSFFLLFVLSGGVSTLALTLYTISVHKSFLQQTVLWRLMLAVIKNWGNHRREFSRQPNDVLLTVPKIFPNATNLQIQFPALFSFFLVALVVSWGHETEGNMNLTMDDSGKGRIGVIVDESSRIGKEEILAMQMAVEDLNSSRNQSFSLVIRDYKSAPNLAALAAKELISMQRVQVLIGPQTWEATSIVSEVENEKQTPVLTLANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHLVNVIYEDRDFSTTEIFPHLVHALKDVGAEVSEFVSLSQFDSDLFTKELERLRRGSSRVFVVHLPFKLALRLFEIAKEMGMMGNGYVWITTDSFTSLAHSFNASIFSVLQGVVGVKRFFPGDKPPFHEFHLRFRRRFRLEHSDEDEHEPGIYAVQAYDAATTAAMAMSEIQEKGNALLEQIKLTAFQGLSGMIQFKDRKLAPADTFQIINIMGRGYRELGFWSDKSGFSRELRENSSSNSSMKDLSQVFWPGGSSETPKGWVVPTDANPLRIGVPTGSMFKQYVQVEEDPKGNNLTFTGLAIDLFKETIHSLHVPPSYEFYRFNGSYDDLVNEIYLKNFDAAVGDIAIISRRYEHADFTHPYSEAGLVMIVPTRKDKSNKSLLFTKPFTLTMWIAIAMINAYNGFVVWFIERSRYPCHDGSMFNHAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQRLEPTISNIETLQRANALVGYGKGSFVKRYLEEVLHFRPENIKNYSTPEDLAEALRNQEISAAFLEVPFVKIFLARFCREFMISGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFKALEDSMIGNETCEDDDAKEEGSRLSSNSFFILFVLSGGVSTVALTLFIFNAHSSSFHQNAIWRLMIAVMRHWGEHRRSPSRRVCDELQTTTVSYNFAHNTNLRIQV 1730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4240801 4250316 + CmoCh09G008240.1 Cmo09g00824 388826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00824 1730 PANTHER GLUTAMATE RECEPTOR 886 1715 - -
Cmo09g00824 1730 Gene3D - 1013 1148 - -
Cmo09g00824 1730 Gene3D - 149 306 - -
Cmo09g00824 1730 Pfam Ligand-gated ion channel 762 794 IPR001320 GO:0015276|GO:0016020
Cmo09g00824 1730 PANTHER GLUTAMATE RECEPTOR 23 847 - -
Cmo09g00824 1730 SUPERFAMILY Periplasmic binding protein-like I 895 1286 IPR028082 -
Cmo09g00824 1730 Gene3D - 28 148 - -
Cmo09g00824 1730 Gene3D - 893 1012 - -
Cmo09g00824 1730 Pfam Bacterial extracellular solute-binding proteins, family 3 450 761 IPR001638 -
Cmo09g00824 1730 Gene3D - 1406 1547 - -
Cmo09g00824 1730 Gene3D - 540 678 - -
Cmo09g00824 1730 Gene3D - 313 430 - -
Cmo09g00824 1730 Gene3D - 1181 1296 - -
Cmo09g00824 1730 Gene3D - 1298 1405 - -
Cmo09g00824 1730 CDD PBP1_GABAb_receptor_plant 895 1256 IPR044440 -
Cmo09g00824 1730 SUPERFAMILY Periplasmic binding protein-like I 31 423 IPR028082 -
Cmo09g00824 1730 SMART GluR_14 1295 1633 IPR001320 GO:0015276|GO:0016020
Cmo09g00824 1730 SMART GluR_14 432 766 IPR001320 GO:0015276|GO:0016020
Cmo09g00824 1730 SUPERFAMILY Periplasmic binding protein-like II 408 761 - -
Cmo09g00824 1730 CDD GluR_Plant 429 764 - -
Cmo09g00824 1730 SUPERFAMILY Periplasmic binding protein-like II 1271 1628 - -
Cmo09g00824 1730 Pfam Receptor family ligand binding region 912 1235 IPR001828 -
Cmo09g00824 1730 Pfam Receptor family ligand binding region 48 372 IPR001828 -
Cmo09g00824 1730 CDD PBP1_GABAb_receptor_plant 31 393 IPR044440 -
Cmo09g00824 1730 Pfam Ligand-gated ion channel 1629 1661 IPR001320 GO:0015276|GO:0016020
Cmo09g00824 1730 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 886 1715 - -
Cmo09g00824 1730 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 847 - -
Cmo09g00824 1730 Pfam Bacterial extracellular solute-binding proteins, family 3 1317 1628 IPR001638 -
Cmo09g00824 1730 Gene3D - 1579 1638 - -
Cmo09g00824 1730 Gene3D - 679 771 - -
Cmo09g00824 1730 CDD GluR_Plant 1292 1631 - -
Cmo09g00824 1730 Gene3D - 431 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00824 - - - cmax:111476825 1563.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01287 Cmo09g00824 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00182 Cmo-Chr5:784862 Cmo09g00824 Cmo-Chr9:4240801 5.91E-08 dispersed
Cmo05g00183 Cmo-Chr5:805904 Cmo09g00824 Cmo-Chr9:4240801 2.84E-112 dispersed
Cmo09g00824 Cmo-Chr9:4240801 Cmo12g00598 Cmo-Chr12:3688292 3.23E-126 dispersed
Cmo01g01287 Cmo-Chr1:10243120 Cmo09g00824 Cmo-Chr9:4240801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00824 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0