Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00830 ATGGAGTCTCAGCTCAAGAAGAGCGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAAGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGA 792 45.33 MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4266851 4271426 - CmoCh09G008300.1 Cmo09g00830 388832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00830 263 MobiDBLite consensus disorder prediction 19 42 - -
Cmo09g00830 263 MobiDBLite consensus disorder prediction 1 63 - -
Cmo09g00830 263 MobiDBLite consensus disorder prediction 244 263 - -
Cmo09g00830 263 CDD REX4_like 79 227 IPR037431 GO:0006364|GO:0008408
Cmo09g00830 263 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 41 254 - -
Cmo09g00830 263 Pfam Exonuclease 79 226 IPR013520 -
Cmo09g00830 263 SMART exoiiiendus 77 235 IPR013520 -
Cmo09g00830 263 MobiDBLite consensus disorder prediction 44 63 - -
Cmo09g00830 263 PANTHER RNA EXONUCLEASE 4 41 254 - -
Cmo09g00830 263 SUPERFAMILY Ribonuclease H-like 78 232 IPR012337 -
Cmo09g00830 263 Gene3D - 74 253 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00830 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - csv:101211187 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02842 Cmo-Chr4:20309931 Cmo09g00830 Cmo-Chr9:4266851 2.11E-11 dispersed
Cmo09g00830 Cmo-Chr9:4266851 Cmo09g01078 Cmo-Chr9:5842246 1.20E-19 dispersed
Cmo09g00830 Cmo-Chr9:4266851 Cmo15g00343 Cmo-Chr15:1597157 5.82E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00830 Cmo_Chr09 FPKM 65.099907 68.938957 51.577198 49.650928 58.082863 56.743423 63.516914 18.177582 17.934507 22.530046