Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00840 ATGGCTGCCGGCGACCAGTCCACTTCCACCGCCTCCGCCGCTGAGGCGTCCAATTCCAAAGAGATCAGGTACAGGGGCGTCAGAAAGAGGCCGTGGGGCCGCTACGCAGCGGAAATCCGGGACCCTCGGAAAAAAACCAGGGTTTGGCTAGGAACAATCAACACGGCGGAGGAGGCGGCGCGTGCATATGATACGGCGGCGCGTGAATTTAGAGGCGCCGATGCCAAAACCAACTTCCCCGTTCCGAACGGTTTCTTAACCGTCGACAACAACAATAACTTCCGTAAATCCGCTTGTAGTAGTCCCAGCCAGTGTAGCACCGTCGAGTCCACTTCCCCGTCACCGGCGCCGTCGGATCCCACCATCACTGACGTCCACGCGCCGGCCATTTCCCGCCCAATTTTCTTCTTCGACGCGTTTGCCCAAGTGGAGAAGAACAGTGACTTTCGCCGGATAGTTACCGGTGCCGGCGGATCAAGAAGCGATTCCGATTCGTCATCCGTTGTCGATTTCGACAGGACGAGAAAATCTCGGCCGTTAGATTTTGACCTGAATCTTCCGGCTGTGGAAGTTGTTTGA 579 56.82 MAAGDQSTSTASAAEASNSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTINTAEEAARAYDTAAREFRGADAKTNFPVPNGFLTVDNNNNFRKSACSSPSQCSTVESTSPSPAPSDPTITDVHAPAISRPIFFFDAFAQVEKNSDFRRIVTGAGGSRSDSDSSSVVDFDRTRKSRPLDFDLNLPAVEVV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4302114 4302692 + CmoCh09G008400.1 Cmo09g00840 388842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00840 192 MobiDBLite consensus disorder prediction 96 124 - -
Cmo09g00840 192 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Cmo09g00840 192 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Cmo09g00840 192 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Cmo09g00840 192 PANTHER ERF FAMILY PROTEIN 127 181 - -
Cmo09g00840 192 PANTHER ERF FAMILY PROTEIN 7 117 - -
Cmo09g00840 192 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Cmo09g00840 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 127 181 - -
Cmo09g00840 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 117 - -
Cmo09g00840 192 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Cmo09g00840 192 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Cmo09g00840 192 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Cmo09g00840 192 MobiDBLite consensus disorder prediction 1 22 - -
Cmo09g00840 192 MobiDBLite consensus disorder prediction 1 17 - -
Cmo09g00840 192 MobiDBLite consensus disorder prediction 96 119 - -
Cmo09g00840 192 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00840 K09286 EREBP; EREBP-like factor - csv:101213540 254.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01275 Cmo09g00840 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00840 Cmo-Chr9:4302114 Cmo02g00060 Cmo-Chr2:309781 9.75E-32 dispersed
Cmo19g00624 Cmo-Chr19:6842440 Cmo09g00840 Cmo-Chr9:4302114 3.49E-28 dispersed
Cmo01g01275 Cmo-Chr1:10190722 Cmo09g00840 Cmo-Chr9:4302114 2.80E-84 wgd
Cmo11g01992 Cmo-Chr11:13647284 Cmo09g00840 Cmo-Chr9:4302114 8.52E-37 wgd
Cmo13g00650 Cmo-Chr13:6895551 Cmo09g00840 Cmo-Chr9:4302114 6.64E-32 wgd
Cmo18g00367 Cmo-Chr18:2396343 Cmo09g00840 Cmo-Chr9:4302114 8.52E-39 wgd
Cmo07g00223 Cmo-Chr7:1124938 Cmo09g00840 Cmo-Chr9:4302114 7.14E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10376 PF00847 AP2 4.70E-12 CL0081 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00840 Cmo_Chr09 FPKM 20.544716 17.15225 54.727409 50.650963 5.515724 9.732032 8.195372 3.371943 3.615656 7.21191