Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00841 ATGGGACGGATTTTTGTTGTGGAAAGGGAAGGGAGTTCCTACAGATGCAAGTTCTGCAATACGCAGTTAGCTCTAGCCGACGATCTTGCATCTCGGGCCTTTCATTGCCGCCGCGGTAAAGCATATCTTTTCAATAATGCGATAAACTTCTTTTTGGGAGCCTTGGAAGATAGGATAATGCTCTCTGGATCCCATACTGTTGCAGACATATTTTGTTGCAAATGTGGACAAATTGTTGGGTGGAAATACGAAGCAGCGCATGAGAAGAGCCAGAAGTACAAGGAGGGGAAGTATGTTCTTGAAAGGGGGAGGATAGTCGACGACATTGAATTCTCGACTGGCTTCTACCTGAGTGAATGCATCTATAGTCATATAAAGCTGCTGCAGGCACTCATATTGTGCTGCAAGTTTTTGGTCATTGATGTTGGTTCAATCCCGATGGGGAAAGCCTCTTCTTCTCGCAAGAAGGAGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAAGAGTAGTAGGAGATTGAAGTCCAAGAAGCTGCGGTATCGCCACGATTCTCCTTCTTGCTCTGACACTGATTTTGAAAGTTCAACTTCAGTGTCTTCTTCTAGCTCGGAGGATGACAAAAAAGTGAGAAGATCTCGATCCAAGACGCGAAAGAATTCGAAGCCTAGTAAAAAGAGATCCAAGAAGCAATCTCATGACCATCAAAGTAGGGAATGCTCTCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAAGCGACAGATATGAGGCTAAGAAGACCAACAAAAAGAAGCGTAGAAGAGATGCGAGTGTTGGTGCCACAAATAGTGACTCTCTGGGCCGCTCTACTTGTGGAGATGGAAGTTCAACCAGCAGTGATAGTGAAATTGATAGGCGTAGGGGAAGGTCTGGAAAGAGGAAAAGAAATATGGTGAAGACTGAAGGAAGAAGATACAGGTCAAAGAGCCGTTCACCATGCTCTTTATGTAGTGACGGTAGTGATTTTCAGAATGAGGTTGAGGATGACAGTTATGTCGAAAACAGCTGTAGACGACTAAAATCCATAATTGTTGTAGTAGGGGAGGAAGATGAATTAAAGACTTTTGTTGGGAATGAACAACAAGAAGCGGTCACGCATCAGCTTGATGATAACCACCCTTCGTTCGGGGATATGAATAGTAAGGATGGGACGAGTAAAAGAGAATTAGACTATGTTATATCTAAAGAGGCACCAGAGGTAGAAAGCAAAAACAAAATAGTTACACCTGACAATAGGAACTCTCTGATTCTAAACGATGATGGAGTTCGAAATGAGGGAAGCAACAAAAACCATGGAGGAGTAACTAATGATCATTCTTTAGATGAAAGAAAGAATGGCTGTTCTGGAAATACCGAAAGCATAAATTGTATCGATTTAGAGTCAATTTTAAGGCAGAAGGCCCTGGAAAACCTTAGAAAGTTCAAAGGGGTTTCCCCAAGGAATGTGGAAATTATTGCTAATTGCAAAGTTGAGAATAATAATGATGCAAAGCAATTGATTTCCCCAGTCTCTAAGTCAGTTCATGTGACATTTCCTAGGGATGATGCCGAAATAAATGTTAAAGGGTTCTCTAGACAAGACGGAGGGGATGCGGTAAATTCAATGATAGTTAAGGGGAATGGTTTTAAGTCTACAGATGCAATAGATACAGCAGTTGCATCTATGCATGATCCTGTCTGTTCTTCACAGAATCTTGGTAAAATTTCCAATGGAAGTAATGGTATGAATGAACCGAAGCAGGATATTTCTTCATTAGACCAAGAGGTTATAAATGATAATATTTGCCTCAAGGCAGATGCAGATATTTATTCTACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTTAGGCCCGAGTCAAAAGTTGATTCTTTTATAAAGAAGGCATCTGTTGATCAGGAATGTATCCAAACAAAGTCATCTATATCTGACATTGTCGTAGACGAAACTGCTCAAACCCAGACCCAGATGACGAATAATGACGATCAAAATATCCGTAATGGTTTTGGTTCTTCAGCTTATAAGTCTTCTTCTTCCCTTAACCCTATTTCAGGAGAAAATAGGTTGGACAAGTCCAGACAGGAGAGTGGGGAAGGCTCACAATTTGAACAGAAAACCATGTCTGTGATGCGGGGTGGTGAAATGGTGCAGAATCTGAAACAGCAAGTTTCAAGTCAGGAAAGATTGAACTTAGATGACTTGGTAGACAAAAATCAAGATTACTATTTTCAGATTATTCTTACAAACACGAGATTTAAATATTCAGATTACATTGAGTTACAGTTACACTGCTTCTATCAAATTAGTCATTCTTCTGTGAAAGTTATGGAAATAATTGAGTGA 2394 40.6 MGRIFVVEREGSSYRCKFCNTQLALADDLASRAFHCRRGKAYLFNNAINFFLGALEDRIMLSGSHTVADIFCCKCGQIVGWKYEAAHEKSQKYKEGKYVLERGRIVDDIEFSTGFYLSECIYSHIKLLQALILCCKFLVIDVGSIPMGKASSSRKKERSKTSSSQRSRRKSKSSRRLKSKKLRYRHDSPSCSDTDFESSTSVSSSSSEDDKKVRRSRSKTRKNSKPSKKRSKKQSHDHQSRECSPHPRKRKHSKRSDRYEAKKTNKKKRRRDASVGATNSDSLGRSTCGDGSSTSSDSEIDRRRGRSGKRKRNMVKTEGRRYRSKSRSPCSLCSDGSDFQNEVEDDSYVENSCRRLKSIIVVVGEEDELKTFVGNEQQEAVTHQLDDNHPSFGDMNSKDGTSKRELDYVISKEAPEVESKNKIVTPDNRNSLILNDDGVRNEGSNKNHGGVTNDHSLDERKNGCSGNTESINCIDLESILRQKALENLRKFKGVSPRNVEIIANCKVENNNDAKQLISPVSKSVHVTFPRDDAEINVKGFSRQDGGDAVNSMIVKGNGFKSTDAIDTAVASMHDPVCSSQNLGKISNGSNGMNEPKQDISSLDQEVINDNICLKADADIYSTTNRSNLVIAAFRPESKVDSFIKKASVDQECIQTKSSISDIVVDETAQTQTQMTNNDDQNIRNGFGSSAYKSSSSLNPISGENRLDKSRQESGEGSQFEQKTMSVMRGGEMVQNLKQQVSSQERLNLDDLVDKNQDYYFQIILTNTRFKYSDYIELQLHCFYQISHSSVKVMEIIE 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4305343 4313267 + CmoCh09G008410.1 Cmo09g00841 388843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00841 797 MobiDBLite consensus disorder prediction 276 295 - -
Cmo09g00841 797 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cmo09g00841 797 PANTHER TRANSCRIPTIONAL REGULATOR ATRX-LIKE PROTEIN 147 734 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 147 336 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 428 461 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 216 235 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 676 721 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 676 704 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 161 183 - -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 428 451 - -
Cmo09g00841 797 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 14 105 IPR004910 -
Cmo09g00841 797 MobiDBLite consensus disorder prediction 245 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00841 - - - csv:101205593 727.243
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01273 Cmo09g00841 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01274 Cmo-Chr1:10185958 Cmo09g00841 Cmo-Chr9:4305343 1.56E-63 dispersed
Cmo03g00373 Cmo-Chr3:4664532 Cmo09g00841 Cmo-Chr9:4305343 1.24E-36 dispersed
Cmo04g01190 Cmo-Chr4:6094007 Cmo09g00841 Cmo-Chr9:4305343 8.46E-48 dispersed
Cmo04g03033 Cmo-Chr4:21271329 Cmo09g00841 Cmo-Chr9:4305343 5.40E-41 dispersed
Cmo09g00841 Cmo-Chr9:4305343 Cmo13g00649 Cmo-Chr13:6887842 5.18E-39 dispersed
Cmo01g01273 Cmo-Chr1:10183071 Cmo09g00841 Cmo-Chr9:4305343 0 wgd
Cmo18g00366 Cmo-Chr18:2391497 Cmo09g00841 Cmo-Chr9:4305343 6.51E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g186 . . . . . . . . . . Cma01g01218 Cma09g00848 Car01g01042 Car09g00761 . Cpe06g00676 Cpe02g00693 Bhi09g03455 . . . Hepe01g1403 . . Cla11g01743 Cam11g1811 Cec11g1831 Cco11g1837 Clacu11g1971 Cmu11g1781 Cre11g2188 Cone6ag0164 . . . Lsi04g02052 Csa04g02324 Chy07g00056 Cme07g00577 . . . . . . . . . Cmo01g01273 Cmo09g00841 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005837 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00841 Cmo_Chr09 FPKM 49.20557 57.079361 113.464935 108.850052 17.238489 17.959833 16.327578 8.438478 9.359416 7.881025