Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00844 ATGGCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTCATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAACAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACAAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCCGTTGCAGATCTGCTGCAGTCTGGGCCACCTCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCCCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGACGGATACAATGAGAAGGCTGACATCTGGTCCCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTTCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAGTCCACCTCAGTTGGATGAACATTTTTCTCGACCTATGAAAGAATTAGTGTCACTTTGTCTGAAGAAAATACCTGCTGAGAGACCTAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGACGATGAAGAATCACCAACAAATGGTCCTAGAACTATAGGTGAATCATCAGACACTGTGAAAGTTTCAAGAAATTTAAGAGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCGAAGAATGCTGGATGGGACTTTAGTATTGGGGGTCCACATAGTACAGGTACTGTTCGAAGTTTAGTAAAACCACCTCAAATTAGGGAACGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGCTGCAGAGAGTGGTCACTGGCAAGCTGCATCTGGAAATGCACCACGCGACATAGCAAAAAATGCTAAAGATTCATTCAATATGGGGGATGATAGTGAAGATGAAGAGTTATCTGTAAGCGGTTCAGGAACCATTGTGGTCCGGTCTCCCAGAGGACCTCAAGCATCTACTCAATTTCATAATGAAAGCAATCCGTCTGGAAGCATACAGGCATATTTTGAGGACACATCTTATGGTGGTACTGTTGTTATGCGTGGTCAACGGGATGGTTCTGAGTCTCCTCGGACTCCAAAATCCAGATTTGGAATTCAAGAAAGGAATTCAAGTTTGCCTCCTGAAGATAGTGCATCAAACCTCGCGGAGGCAAAGGCTGCAATGCAAGCAGGATTGAAGAAATCTAATGTAAGGGATAGACCAGCTCTCACTAAACGCAACGACAGGCAGGAAAGTAGGAAAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCACCAAAAGCATTGGCAAAACCATCTCTACCGATTGACGATGAAGAAAGTAGAAAAGTAGTGTCGTCTTCTGCACCATTATCAGTTTTGTTTATGTCATCCTTGAAAGAGGTAGTTGTAGATGATTCGGAAGGATCGCCTGCCCGTACTGTAATTAATGCTCTTATAAGTATGGAACACCGAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCGAGGAATCTTCATTGAAGGATTTACAAGACTTGGCAACTCGCATATTCACCAAGGCAAAGACAGTTCCTGAAGTTACACAAAATGTCACGGATTCTGATAGCAGCAAAAGGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCGAGGGATCTGAGTCCAGCTTAA 2085 42.73 MADVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQQEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLSDLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKDDEESPTNGPRTIGESSDTVKVSRNLREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSLVKPPQIRERKPEIPYGQAAPSRAAESGHWQAASGNAPRDIAKNAKDSFNMGDDSEDEELSVSGSGTIVVRSPRGPQASTQFHNESNPSGSIQAYFEDTSYGGTVVMRGQRDGSESPRTPKSRFGIQERNSSLPPEDSASNLAEAKAAMQAGLKKSNVRDRPALTKRNDRQESRKTEQTVSSSDSSRHSREFFDAPKALAKPSLPIDDEESRKVVSSSAPLSVLFMSSLKEVVVDDSEGSPARTVINALISMEHRKPGSCEVLVTKLLQKLASSEESSLKDLQDLATRIFTKAKTVPEVTQNVTDSDSSKRQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4321404 4331804 - CmoCh09G008440.1 Cmo09g00844 388846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00844 694 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 469 487 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 647 669 - -
Cmo09g00844 694 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 CDD STKc_MST3_like 14 287 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 508 526 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 410 447 - -
Cmo09g00844 694 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmo09g00844 694 MobiDBLite consensus disorder prediction 278 545 - -
Cmo09g00844 694 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 SUPERFAMILY Protein kinase-like (PK-like) 13 322 IPR011009 -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 278 297 - -
Cmo09g00844 694 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 692 - -
Cmo09g00844 694 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 692 - -
Cmo09g00844 694 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00844 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1196.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01271 Cmo09g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00844 Cmo-Chr9:4321404 Cmo18g01122 Cmo-Chr18:11582886 3.27E-72 dispersed
Cmo20g00165 Cmo-Chr20:835711 Cmo09g00844 Cmo-Chr9:4321404 2.78E-25 dispersed
Cmo01g01271 Cmo-Chr1:10161747 Cmo09g00844 Cmo-Chr9:4321404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01271 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 8.6e-223 770.8
Cmo09g00844 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.2e-218 756.1
Cmo01g01271 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.0 1.0e-228 790.4
Cmo09g00844 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 4.9e-226 781.6
Cmo18g01122 . 4 831 MAP Kinase Kinase Kinase Kinase AT1G69220 57.4 1.2e-231 800.4
Cmo01g01271 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.3e-68 256.1
Cmo09g00844 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 1.1e-67 255.8
Cmo04g02836 CST 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 65.0 2.6e-248 855.5
Cmo15g00350 CST 1 727 MAP Kinase Kinase Kinase Kinase AT5G14720 61.0 4.1e-238 821.6
Cmo16g01274 . 6 143 MAP Kinase Kinase Kinase Kinase AT5G14720 55.0 1.6e-48 191.8
Cmo06g00592 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 6.4e-245 844.3
Cmo16g01271 CST 18 489 MAP Kinase Kinase Kinase Kinase AT4G24100 53.8 6.9e-114 409.1
Cmo16g01274 . 7 143 MAP Kinase Kinase Kinase Kinase AT4G24100 62.6 4.1e-58 223.8
Cmo06g00592 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.8e-242 834.7
Cmo16g01271 CST 18 490 MAP Kinase Kinase Kinase Kinase AT4G10730 54.7 4.1e-116 416.4
Cmo16g01274 . 11 143 MAP Kinase Kinase Kinase Kinase AT4G10730 61.1 6.9e-55 213.0
Cmo01g00200 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.3 2.5e-133 473.4
Cmo06g00592 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.6e-116 417.5
Cmo01g00200 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.1e-218 756.1
Cmo15g00350 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.3e-103 374.4
Cmo04g02836 CST 6 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 2.0e-101 367.1
Cmo01g00200 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.4e-88 322.0
Cmo06g00592 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cmo14g01826 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 1.5e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74578 PF00069 Pkinase 2.10E-68 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00844 Cmo_Chr09 FPKM 0.961382 1.358418 1.918597 1.61029 1.660936 1.229872 1.107426 2.732319 1.529645 2.005653