Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00844 ATGGCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTCATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAACAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACAAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCCGTTGCAGATCTGCTGCAGTCTGGGCCACCTCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCCCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGACGGATACAATGAGAAGGCTGACATCTGGTCCCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTTCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAGTCCACCTCAGTTGGATGAACATTTTTCTCGACCTATGAAAGAATTAGTGTCACTTTGTCTGAAGAAAATACCTGCTGAGAGACCTAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGACGATGAAGAATCACCAACAAATGGTCCTAGAACTATAGGTGAATCATCAGACACTGTGAAAGTTTCAAGAAATTTAAGAGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCGAAGAATGCTGGATGGGACTTTAGTATTGGGGGTCCACATAGTACAGGTACTGTTCGAAGTTTAGTAAAACCACCTCAAATTAGGGAACGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGCTGCAGAGAGTGGTCACTGGCAAGCTGCATCTGGAAATGCACCACGCGACATAGCAAAAAATGCTAAAGATTCATTCAATATGGGGGATGATAGTGAAGATGAAGAGTTATCTGTAAGCGGTTCAGGAACCATTGTGGTCCGGTCTCCCAGAGGACCTCAAGCATCTACTCAATTTCATAATGAAAGCAATCCGTCTGGAAGCATACAGGCATATTTTGAGGACACATCTTATGGTGGTACTGTTGTTATGCGTGGTCAACGGGATGGTTCTGAGTCTCCTCGGACTCCAAAATCCAGATTTGGAATTCAAGAAAGGAATTCAAGTTTGCCTCCTGAAGATAGTGCATCAAACCTCGCGGAGGCAAAGGCTGCAATGCAAGCAGGATTGAAGAAATCTAATGTAAGGGATAGACCAGCTCTCACTAAACGCAACGACAGGCAGGAAAGTAGGAAAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCACCAAAAGCATTGGCAAAACCATCTCTACCGATTGACGATGAAGAAAGTAGAAAAGTAGTGTCGTCTTCTGCACCATTATCAGTTTTGTTTATGTCATCCTTGAAAGAGGTAGTTGTAGATGATTCGGAAGGATCGCCTGCCCGTACTGTAATTAATGCTCTTATAAGTATGGAACACCGAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCGAGGAATCTTCATTGAAGGATTTACAAGACTTGGCAACTCGCATATTCACCAAGGCAAAGACAGTTCCTGAAGTTACACAAAATGTCACGGATTCTGATAGCAGCAAAAGGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCGAGGGATCTGAGTCCAGCTTAA 2085 42.73 MADVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQQEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLSDLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKDDEESPTNGPRTIGESSDTVKVSRNLREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSLVKPPQIRERKPEIPYGQAAPSRAAESGHWQAASGNAPRDIAKNAKDSFNMGDDSEDEELSVSGSGTIVVRSPRGPQASTQFHNESNPSGSIQAYFEDTSYGGTVVMRGQRDGSESPRTPKSRFGIQERNSSLPPEDSASNLAEAKAAMQAGLKKSNVRDRPALTKRNDRQESRKTEQTVSSSDSSRHSREFFDAPKALAKPSLPIDDEESRKVVSSSAPLSVLFMSSLKEVVVDDSEGSPARTVINALISMEHRKPGSCEVLVTKLLQKLASSEESSLKDLQDLATRIFTKAKTVPEVTQNVTDSDSSKRQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4321404 4331804 - CmoCh09G008440.1 Cmo09g00844 388846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00844 694 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 469 487 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 647 669 - -
Cmo09g00844 694 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 CDD STKc_MST3_like 14 287 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 508 526 - -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 410 447 - -
Cmo09g00844 694 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmo09g00844 694 MobiDBLite consensus disorder prediction 278 545 - -
Cmo09g00844 694 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 SUPERFAMILY Protein kinase-like (PK-like) 13 322 IPR011009 -
Cmo09g00844 694 MobiDBLite consensus disorder prediction 278 297 - -
Cmo09g00844 694 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 692 - -
Cmo09g00844 694 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 692 - -
Cmo09g00844 694 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00844 694 Coils Coil 41 68 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01271 Cmo09g00844 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00844 Cmo-Chr9:4321404 Cmo18g01122 Cmo-Chr18:11582886 3.27E-72 dispersed
Cmo20g00165 Cmo-Chr20:835711 Cmo09g00844 Cmo-Chr9:4321404 2.78E-25 dispersed
Cmo01g01271 Cmo-Chr1:10161747 Cmo09g00844 Cmo-Chr9:4321404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74578 PF00069 Pkinase 2.10E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00844 K08838 - csv:101214412 1196.42