Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00846 | ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGTATTGTACTTACTTGCCATTGGTGAAAAAGTTGGGCTCGGCTCGTCCGATCCGGACTCAGGAAAAGGAAAGAGCAAGATGTCGAAGCATGTCACACATGGTTATCATTTGGTGAAAGGGAAATCGAACCATGCCATGGAAGATTACGTGGTTGCCGAGTTTAAGCAAGTTGATCATCATGAGCTGGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAACTCTATCCCTGATTATTTACAGTCCCATCTATTTGCTAATATCATAAACGAGCCTGATTTCTGGACGAACCCAACGGACGCAGTCAGGAAAGCATACGAGGCAACCGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCGACTGCTGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTCGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTCGTAACGGTAAAGCCAGTCAATTATCAATCGATCACGAACCGAGCGTTGAAAGAAAAAGCATCGAGGACAGAGGTGGTTTCGTTTCAAACTTTCCTGGAGATGTTCCACGTGTCGACGGGCAGTTGGCGGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCAGAGCCATACGTGGTTGTGGAGACGATCGACGACGAGACCGAATTGGTTATCTTAGCAAGCGACGGATTGTGGAAGGTTATGTCGAACGAGGAAGCCGTAGAGTCGATCAGGCATCTGAAAGACGCTCAAGCAGCTGCCAAACACCTGACAGAAGAGGCCCTCAAGAGGAAGAGCAGAGATGATATTTCTTGTATAGTTGTGAGATTTCTGTGA | 876 | 46.12 | MTGKEILHKMKVLYLLAIGEKVGLGSSDPDSGKGKSKMSKHVTHGYHLVKGKSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFANIINEPDFWTNPTDAVRKAYEATDAYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRNGKASQLSIDHEPSVERKSIEDRGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVVETIDDETELVILASDGLWKVMSNEEAVESIRHLKDAQAAAKHLTEEALKRKSRDDISCIVVRFL | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 4340957 | 4343909 | + | CmoCh09G008460.1 | Cmo09g00846 | 388848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00846 | 291 | ProSitePatterns | Glycosyl hydrolases family 5 signature. | 95 | 104 | IPR018087 | GO:0004553|GO:0005975 | |
Cmo09g00846 | 291 | CDD | PP2Cc | 44 | 290 | IPR001932 | - | |
Cmo09g00846 | 291 | Pfam | Protein phosphatase 2C | 55 | 283 | IPR001932 | - | |
Cmo09g00846 | 291 | ProSiteProfiles | PPM-type phosphatase domain profile. | 43 | 290 | IPR001932 | - | |
Cmo09g00846 | 291 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 290 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo09g00846 | 291 | Gene3D | - | 37 | 291 | IPR036457 | - | |
Cmo09g00846 | 291 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 1 | 290 | - | - | |
Cmo09g00846 | 291 | SUPERFAMILY | PP2C-like | 39 | 290 | IPR036457 | - | |
Cmo09g00846 | 291 | SMART | PP2C_4 | 35 | 288 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00846 | Cmo-Chr9:4340957 | Cmo16g00270 | Cmo-Chr16:1199573 | 5.08E-102 | dispersed | |
Cmo11g01995 | Cmo-Chr11:13667941 | Cmo09g00846 | Cmo-Chr9:4340957 | 1.67E-136 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00846 | K17506 | - | csv:101215129 | 499.59 |