Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00848 ATGCCGGAAAACGATTACGACCCTCTTCTCCAAGTTTCCGATGCCGGCGACCGACCAAACGCCTCCGATTCATGGAAGAAAGTGTTCGATAAAGAGGAGTTCAACAAACAGCTCTCCATTTCATTTCCCATGATTCTCACTAATGTTTTCTACTACTTAATCCCTTTGATTTCCGTCATGTTCGCCGGTCATCTCGGCGACCTCGAACTCGCCGGAGCCACTCTCGCTAATTCCTGGGCCACCGTCACCGGATTCGCTTTCATGACGGGTTTGAGTGGCGCATTGGAGACACTCTGTGGCCAAGGATTTGGGGCGAAACTGTACCGATTTTTAGGGATTCATCTGCAATCATCGTGTATAATCTCTTTCTCCTTCTCGATTTTCATTTCCCTTCTCTGGTTCTACACAGAGCCGGTCTTGATTTTGCTGCAGCAAGATCCCGCCGTGTCGAAAACGGCTGCACGGTATATGAAATTTCTGGTTCCTGGGCTGTTTGCTTATGGGTTTTTGCAGAATAGTGTGAGGTTTATCCAGGCTCAATCTGATGTTATGTTTTTGGCTGTGCTTTCTGGAATTCCGTTGGTTCTTCATGTTGGTGTTGCTTATGGTTTTGTGAACTGGACGAGTTTGGGGCTGGAAGGAGCTGCTATGGCAGCTTCTATTTCATTGTGGGTGGCTTTCTTGGTTGTGGCTGTTTATGTGTTTAAGTGTGAGAAGTATAAGCGTACATGGGAAGGATTCTCTGTTGAAGCTTTTAGTTACATAGTATTCAATTTGAAACTTGCTTTGCCATCTGCTGCAATGGTTTGTTTGGAGTATTGGGCATTTGAGATTCTTGTGTTCTTGGCTGGATTGGCTCCAAACTCGGAAACAAATACCTCTTTGATTGCAATTTGTGTAAACACAGAAGCCATTGCCTACATGATCACATATGGACTCAGTGCAGCTGCAAGCACAAGGGTGTCAAATGAGCTGGGGGCAGGCAACCCTGATAGAGCAAGACAAGCCATGTTTGTCACTCTTCTACTCTCATTCCTTCTAGGCCTTTCAGTCGTTCTTCTTCTAGCATTTGGCCACAACATCTGGGCAGGATTCTTCAGTAGTAGTCCTGTAATTATACAAGCCTTTGCCTCCATGACACCCCTTCTCACCATTTCCGTGCTCGCCGACTCCGTCCAAGGCGTATTATCAGGGGTGGCTAGAGGATGTGGTTGGCAACACATGGTTGTGGTTGTAAACTTAGCTACATTCTATCTTGTTGGTATCTCAACAGCAGTCTTTCTGGAATTCAGAATGAAGCTTTATGCCACGGGGTTGTGGATTGGTTTGATCTGTGGCTTGTTATGCCAAACTTTGACACTGTTGATATTAATAGTTCGTTCAAAGTGGACAAGAATTGAGCTGTCTGATCATGGAGGTAAGCAAAATCCAGCTTTGACTTGA 1443 45.53 MPENDYDPLLQVSDAGDRPNASDSWKKVFDKEEFNKQLSISFPMILTNVFYYLIPLISVMFAGHLGDLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKLYRFLGIHLQSSCIISFSFSIFISLLWFYTEPVLILLQQDPAVSKTAARYMKFLVPGLFAYGFLQNSVRFIQAQSDVMFLAVLSGIPLVLHVGVAYGFVNWTSLGLEGAAMAASISLWVAFLVVAVYVFKCEKYKRTWEGFSVEAFSYIVFNLKLALPSAAMVCLEYWAFEILVFLAGLAPNSETNTSLIAICVNTEAIAYMITYGLSAAASTRVSNELGAGNPDRARQAMFVTLLLSFLLGLSVVLLLAFGHNIWAGFFSSSPVIIQAFASMTPLLTISVLADSVQGVLSGVARGCGWQHMVVVVNLATFYLVGISTAVFLEFRMKLYATGLWIGLICGLLCQTLTLLILIVRSKWTRIELSDHGGKQNPALT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4353374 4357375 + CmoCh09G008480.1 Cmo09g00848 388850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00848 480 TIGRFAM matE: MATE efflux family protein 43 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g00848 480 PANTHER PROTEIN DETOXIFICATION 17 473 - -
Cmo09g00848 480 Pfam MatE 264 425 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g00848 480 Pfam MatE 43 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g00848 480 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 473 - -
Cmo09g00848 480 CDD MATE_eukaryotic 33 465 IPR045069 GO:0042910|GO:1990961
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00848 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101203764 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00848 Cmo-Chr9:4353374 Cmo16g00435 Cmo-Chr16:2063625 0 dispersed
Cmo18g00994 Cmo-Chr18:10851394 Cmo09g00848 Cmo-Chr9:4353374 8.97E-77 dispersed
Cmo09g00848 Cmo-Chr9:4353374 Cmo11g00301 Cmo-Chr11:1452068 2.06E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00848 Cmo_Chr09 FPKM 17.518751 17.150301 25.919001 24.880632 21.448484 18.266451 20.641277 34.828968 33.146915 31.273335