Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00854 ATGTGGATAGCAATGGAGGCATCATTTGATCCGCTTAGGAACCGGGATGATATATCTGGGGTTTGTGAGGAAGATATATTAGCTGATCCTTATTTGCGTTCACTTAAAGGGAATGATATTAGCTTAAGGCAATGGTTGGATAAGCCAGGAAGGTCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATTGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCATAATGTGCGTCCTTCATGCTTTGTGATGTCTTCTTTCAACCATGTAACGTTTATTGAGTCGGCGTCGTGTTCGGATTCTGGCTCGGATTCTCTTGAGGAGGATGGTTTAAGTAGTCAAATGGCTGAGGTTAAAACATCGTCTTCTCCATTTCCAAGCAGCCTTGGAAGCGAGGGCTTTCGATCTGTTATGACCCCCGTGAACGCTTTTTCGGAGACTAGTTGTATGCAGTCGAGTTCAGTATATGCAGCTCAAGTATCGTTAAATGAAGGGTCTGGAGAATGTAGAAGAAAAGATAGCAGACATGTTGAGGAAACAGAAAATAAGATTCAATCGTTTCCAATGAAGCAGATATTGGCTATGGAGACTACTTGGTACACTAGCCCTGAAGAAGCTTCTGATGGCCCAAGTTCGAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTCGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGGGAAGAGTAGAATTATGTCGAGCTTGAGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCCGACCCAAGTAATCGACCTAAGCTAAGTGAGTTATTGCAGAGTGAATTTCTCAATGAATCGAAAGATGAACTAGAAGAACGTGAAACAGCAATTGAGCTTAGAAAAAGAATTGAAGAGCAGGATTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCGTAAGCTGCAAGATACTATTTCATTTCTGTGCAGTGATATCGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATCGGGTCGCACCCAGATCTTTCGAAGGACAATTGTTTGTCATTAAATCTCCCTTCAATGACTCCTTCTGCCGGACTGGGATCGAGGAAACGATTTAGACCAGGAATTTTGGTCCATGATATAGAAGCATGCGGTGATAACGTTGATGACAGTGAGAAGTCAAGTTCAGACAATGAAAACGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCGTATTTGTTGATGAGAGGTAGAGTAAACAAGCCATCAGGGAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCGGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATCGACAAGGCGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTGAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTCGATCGAGATGGGGAATTTTTTGCCACAGCGGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTCGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGATACATCAAAAGTCAAATAGCTTCAAGTAATTTTGAAGGTGTAGTGCAGGTATGGGATGTCACGAGAAGTCAAGTAGTCACTGAAATGGGAGAACACGAGAGGCGCGTATGGTCCATTGACTTTTCATCAGCGGATCCAACAATATTGGCTAGCGGAAGTGACGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTTCAAGTATCGGCACGATCAGAACGAAAGCCAATGTCTGCTGTGTACAATTTCCTGCGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTACGACATGCGGAATATACGAGTTCCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACCGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTATTGATTCTCCAGTCCTGTCGTTCACTGGCCACATGAACATAAAGAATTTTGTGGGACTGTCAGTCTCTGATGGTTACATTGCTACTGGGTCAGAGACAAATGAGGTTTTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTATAAGTTTCAAATGGATCCTCTTTCCAGTCACGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCGATAGTAGCTGCAAACTCAACTGGGCACATCAAAATTTTGGAAATGGTTTAG 2514 42.36 MWIAMEASFDPLRNRDDISGVCEEDILADPYLRSLKGNDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEEDGLSSQMAEVKTSSSPFPSSLGSEGFRSVMTPVNAFSETSCMQSSSVYAAQVSLNEGSGECRRKDSRHVEETENKIQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREGKSRIMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSNRPKLSELLQSEFLNESKDELEERETAIELRKRIEEQDLLLEFLLLMQQRKQEAARKLQDTISFLCSDIEQVMRHQTNFKKKIGSHPDLSKDNCLSLNLPSMTPSAGLGSRKRFRPGILVHDIEACGDNVDDSEKSSSDNENEQGVLFKSSRLMKNFKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGSSIGTIRTKANVCCVQFPADSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVIDSPVLSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSSHEMDDSAQFISSVCWRGQSSSIVAANSTGHIKILEMV 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4399282 4406097 - CmoCh09G008540.1 Cmo09g00854 388856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00854 837 PRINTS G protein beta WD-40 repeat signature 593 607 IPR020472 -
Cmo09g00854 837 PRINTS G protein beta WD-40 repeat signature 636 650 IPR020472 -
Cmo09g00854 837 PRINTS G protein beta WD-40 repeat signature 720 734 IPR020472 -
Cmo09g00854 837 SMART WD40_4 796 835 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 742 781 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 521 556 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 652 691 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 609 649 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 695 733 IPR001680 GO:0005515
Cmo09g00854 837 SMART WD40_4 567 606 IPR001680 GO:0005515
Cmo09g00854 837 PANTHER PROTEIN SPA1-RELATED 2 8 837 IPR044630 GO:0009640
Cmo09g00854 837 SMART serkin_6 2 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00854 837 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 735 - -
Cmo09g00854 837 ProSitePatterns Trp-Asp (WD) repeats signature. 720 734 IPR019775 -
Cmo09g00854 837 SUPERFAMILY WD40 repeat-like 525 834 IPR036322 GO:0005515
Cmo09g00854 837 Gene3D Transferase(Phosphotransferase) domain 1 38 304 - -
Cmo09g00854 837 Gene3D - 502 837 IPR015943 GO:0005515
Cmo09g00854 837 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 654 - -
Cmo09g00854 837 SUPERFAMILY Protein kinase-like (PK-like) 40 311 IPR011009 -
Cmo09g00854 837 Pfam WD domain, G-beta repeat 698 733 IPR001680 GO:0005515
Cmo09g00854 837 Pfam WD domain, G-beta repeat 614 649 IPR001680 GO:0005515
Cmo09g00854 837 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 658 IPR001680 GO:0005515
Cmo09g00854 837 Coils Coil 296 316 - -
Cmo09g00854 837 ProSiteProfiles Protein kinase domain profile. 1 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00854 837 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 735 IPR001680 GO:0005515
Cmo09g00854 837 PANTHER PROTEIN SPA1-RELATED 3 8 837 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00854 - - - csv:101205812 1484.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01431 Cmo-Chr2:8450975 Cmo09g00854 Cmo-Chr9:4399282 6.09E-177 dispersed
Cmo09g00854 Cmo-Chr9:4399282 Cmo15g01339 Cmo-Chr15:9165497 0 dispersed
Cmo01g01262 Cmo-Chr1:10107433 Cmo09g00854 Cmo-Chr9:4399282 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00854 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.62811 0.993473 1.777956 1.397036 0.0 0.0 0.0