Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00861 ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCATGTCGAACTCAGATTCTGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACCGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCGCACCCGCACCCGCACCCGCACCCGCACCAGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCTTATAGCGACATTGCTTCATATGCACCTTCTTATCTCGGTAATGCCGTGATAACAAGCCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGGGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA 795 48.43 MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSSSHPHPHPHPHQHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4446419 4447213 + CmoCh09G008610.1 Cmo09g00861 388863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00861 264 MobiDBLite consensus disorder prediction 95 162 - -
Cmo09g00861 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Cmo09g00861 264 SUPERFAMILY RING/U-box 25 92 - -
Cmo09g00861 264 SMART ring_2 33 79 IPR001841 -
Cmo09g00861 264 MobiDBLite consensus disorder prediction 124 144 - -
Cmo09g00861 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 264 - -
Cmo09g00861 264 Pfam RING-type zinc-finger 33 77 IPR027370 -
Cmo09g00861 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 264 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cmo09g00861 264 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Cmo09g00861 264 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Cmo09g00861 264 CDD RING-HC_AtRMA_like 31 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00861 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101206686 394.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01258 Cmo09g00861 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01256 Cmo-Chr3:9632303 Cmo09g00861 Cmo-Chr9:4446419 2.23E-45 dispersed
Cmo09g00861 Cmo-Chr9:4446419 Cmo19g01020 Cmo-Chr19:8972590 6.53E-55 dispersed
Cmo01g01258 Cmo-Chr1:10092869 Cmo09g00861 Cmo-Chr9:4446419 1.11E-142 wgd
Cmo13g00667 Cmo-Chr13:6988700 Cmo09g00861 Cmo-Chr9:4446419 1.41E-50 wgd
Cmo07g00241 Cmo-Chr7:1188501 Cmo09g00861 Cmo-Chr9:4446419 8.09E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011682 1 1 0 2 2 0 2 1 0 0 1 0 0 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00861 Cmo_Chr09 FPKM 121.15966 126.486923 117.905693 139.956055 55.066555 48.796135 55.582729 105.923836 120.6269 120.112389