Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00870 ATGATGAACAAATTCGTGGACGAAAACGACGACGAAGAGTGTTTTTACGAGTCCCTTGATCGCATTGCTTCCTCAAGTTCTTGTTCCACTTCCAATTCCGATGACGATAGAGATTCAAATGGAAACTCCCCTAATTATGATTCCGAGCACCCTTTTCCGGTACCCAAATTCCCTATGGCGGCTTCCGACTATGATATTTGGATCTCCGAGCCCGCCTCTGTGTTGGAGCGCCGGCGCCGTCTTCTTCAAGAAATGGGTCTTAGCGGTGACCCTTCTCTCTCACGAGCTAATACGACCTTGGAATTGGATCATAGTGAAATGGGTGTTGGAGATTTTGGTCGATCGGTGTCGTCGGATTCTTTGAGTAGTCAACAACAGCAGCCCACTGCAATCATCCGCTCGAAATCGGCTTCCGGCAGCGATACTAATGACCAGTGTAATTATTCGTCGTCCATTAATTCTCCTTCAATTTTTTCATTTCATTCTGTCAATGAAACCATCACTTCATTTGCAAATAGCTATAATCCTGTAGTCGTTAAGTCCCAAAGCTGTAAGAGCGAGGGAGTTCCATTGGTTGCTTTAGCTGCTTCACAGCATAAGCCGCCATCTGGGAAAAACAGTAGATGGGTGGATGAGATTCGAAGTGATTCCTTAATTGTGAGTACCAATTCCGATCCTGATCCATCGTCGATGTCCCAGAACGGCGTGAATCAACGACAGGTTAGCGAGGATTCGCATTGTTCTACTAGTGAAGAGGTCAATGAGAAAGTCTGTACTATCAAAGATCTTGACAATGGGAAGGAGTTTGTTCTGAATGAGATTACTGAAGATGGAATGTGGAACAAGCTGAAGGAAGTGGGCACTGGGAAACAGTTGACCATGGAGGAGTTTGATAAATGTGTTGGCCATTCACCTATTGTTCAAGAACTGATGCGAAGGCAGATTGTGGAGGATGGTTGTAACGAAAACGTTGATTTAAACGTGAATGGGGATATCGGTAGTAGTTCGAAGTTGAAAAAGAAAGGAGGCTGGTTTAAGGGTATAAAGAGTGTCACTGGCACGGTGAAGGGTCAAAAGGAGAGACGTAGCAGTGACGAGAGGGATACATCGTCTGAGAAGGGTGGACGGAGGTCGAGCTCTGCAACAGATGATAGCCAGGATGTTTCCTTTCATGGTCCAGAGAGAGTAAGAGTTAGGCAGTACGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCTCACACTGGCTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGCGCAGGAGAGGACCGTATCATTCACGTTTGGCAGGTCATTGAGTCGGAGAAAAAGGGCGAACTACTGATGGAGAAACCAGAAGAAGGGAATTTGAGTTTCTTATTTGCAGCTAACGAGTCGCCCGAGCCAACTTCATTATCTCCAAATGTGGATAGCTATCATGAGAAAAAGAGAAGAGGGAGATCTTCCATTAGCCGGAAATCAGTGAGCTTGGAACAAATTATAGTGCCGGACACTGTATTTGGGCTTTCAGAAAAACCTTTCTGTTCATTCCAGGGGCATCTCGATGTCGTGCTCGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGACAAAACTGTACGGCTCTGGCACTTGTCAAGCAATTCCTGTCTCAAAATCTTTTCTCACAGTGATTATGTAACTTGCATCCAGTTCAATCCTATCGACGATCGATACTTCATTAGTGGATCATTAGATGCTAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTCGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTATGAGAACAAGATGCAGCAAAAAAATGAGATAAATCTGCAGAACAAGAAGAGAAAATCTAGCCACAAGAAAATAACTGGATTCCAGTTTGCTCCAGGAAGTTCGACAGAAGTGCTCATTACGTCTGCAGATTCGCGCATCCGATTGGTCGATGGAGTTGATTTGGTCCAGAGATTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCGGCCTGCCTTTCGGCGAACGGCAGGTATGTGATATCAGCCAGTGAGGATTCTCATGTGTACATATGGAAGCACGAAGCTGATTCTCGACCTAGTAGGAGCAAAGGAGTGACAGTGGTTCGATCATACGAGCATTTCCACTGTCAGGATGTCTCTGTGGCTATTCCTTGGCCTGGAACGGGCGACATATGGGGACTTGATGACGATTTTTACGGAGATTACGACAATGTGATTGAAAATCATCTCGACGAAGTCTCGTCGGCTAACCATCCCCCTTCACCTGTGGAGGTAGAAAATGGCAGTGAGGATTCACTATTAGCTTCTGGTTGCACAAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACCAACAGCTACTTCTTCGACAGAATCGCAGCAACTCGGCCGGAGGAAAAGCTCGTTCCGAACACTCAGATTAACCGTAGTCCTCATTCCAGTTTGGACATTGGCCATGGAATGTTTGAAGGCTCGCCGGGATGGGGTATGGTGATCGTAACTGCAGGTCTTCGAGGCGAAATCAGAACGTTCCAAAATTTTGGATTAGCAGTTAAGATTTAA 2718 45.47 MMNKFVDENDDEECFYESLDRIASSSSCSTSNSDDDRDSNGNSPNYDSEHPFPVPKFPMAASDYDIWISEPASVLERRRRLLQEMGLSGDPSLSRANTTLELDHSEMGVGDFGRSVSSDSLSSQQQQPTAIIRSKSASGSDTNDQCNYSSSINSPSIFSFHSVNETITSFANSYNPVVVKSQSCKSEGVPLVALAASQHKPPSGKNSRWVDEIRSDSLIVSTNSDPDPSSMSQNGVNQRQVSEDSHCSTSEEVNEKVCTIKDLDNGKEFVLNEITEDGMWNKLKEVGTGKQLTMEEFDKCVGHSPIVQELMRRQIVEDGCNENVDLNVNGDIGSSSKLKKKGGWFKGIKSVTGTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHTGSIWTIKFSLDGKYLASAGEDRIIHVWQVIESEKKGELLMEKPEEGNLSFLFAANESPEPTSLSPNVDSYHEKKRRGRSSISRKSVSLEQIIVPDTVFGLSEKPFCSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTYENKMQQKNEINLQNKKRKSSHKKITGFQFAPGSSTEVLITSADSRIRLVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGTGDIWGLDDDFYGDYDNVIENHLDEVSSANHPPSPVEVENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRIAATRPEEKLVPNTQINRSPHSSLDIGHGMFEGSPGWGMVIVTAGLRGEIRTFQNFGLAVKI 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4485990 4492798 - CmoCh09G008700.1 Cmo09g00870 388872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00870 905 SMART WD40_4 605 643 IPR001680 GO:0005515
Cmo09g00870 905 SMART WD40_4 696 737 IPR001680 GO:0005515
Cmo09g00870 905 SMART WD40_4 563 602 IPR001680 GO:0005515
Cmo09g00870 905 SMART WD40_4 656 695 IPR001680 GO:0005515
Cmo09g00870 905 SMART WD40_4 522 560 IPR001680 GO:0005515
Cmo09g00870 905 SMART WD40_4 410 449 IPR001680 GO:0005515
Cmo09g00870 905 MobiDBLite consensus disorder prediction 353 401 - -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 569 603 IPR001680 GO:0005515
Cmo09g00870 905 MobiDBLite consensus disorder prediction 107 147 - -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 450 IPR001680 GO:0005515
Cmo09g00870 905 Gene3D - 403 765 IPR015943 GO:0005515
Cmo09g00870 905 SUPERFAMILY WD40 repeat-like 413 740 IPR036322 GO:0005515
Cmo09g00870 905 MobiDBLite consensus disorder prediction 219 248 - -
Cmo09g00870 905 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Cmo09g00870 905 PRINTS G protein beta WD-40 repeat signature 547 561 IPR020472 -
Cmo09g00870 905 PRINTS G protein beta WD-40 repeat signature 589 603 IPR020472 -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 569 603 - -
Cmo09g00870 905 MobiDBLite consensus disorder prediction 22 47 - -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 450 - -
Cmo09g00870 905 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 905 - -
Cmo09g00870 905 MobiDBLite consensus disorder prediction 22 55 - -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 569 IPR001680 GO:0005515
Cmo09g00870 905 MobiDBLite consensus disorder prediction 355 380 - -
Cmo09g00870 905 MobiDBLite consensus disorder prediction 477 499 - -
Cmo09g00870 905 Pfam WD domain, G-beta repeat 565 602 IPR001680 GO:0005515
Cmo09g00870 905 Pfam WD domain, G-beta repeat 711 737 IPR001680 GO:0005515
Cmo09g00870 905 Pfam WD domain, G-beta repeat 524 559 IPR001680 GO:0005515
Cmo09g00870 905 Pfam WD domain, G-beta repeat 416 448 IPR001680 GO:0005515
Cmo09g00870 905 PANTHER WD REPEAT DOMAIN 44 7 905 IPR040324 -
Cmo09g00870 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 563 - -
Cmo09g00870 905 MobiDBLite consensus disorder prediction 115 147 - -
Cmo09g00870 905 MobiDBLite consensus disorder prediction 219 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00870 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1567.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01250 Cmo09g00870 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00440 Cmo-Chr3:5010668 Cmo09g00870 Cmo-Chr9:4485990 0 dispersed
Cmo07g01035 Cmo-Chr7:5123481 Cmo09g00870 Cmo-Chr9:4485990 5.06E-179 dispersed
Cmo09g00870 Cmo-Chr9:4485990 Cmo15g01372 Cmo-Chr15:9347593 7.99E-122 dispersed
Cmo01g01250 Cmo-Chr1:10039200 Cmo09g00870 Cmo-Chr9:4485990 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00870 Cmo_Chr09 FPKM 0.554839 0.968204 0.594821 0.857349 0.390276 0.933529 0.936074 0.460698 0.597749 0.757327