Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00879 ATGGTGAAAATGAAGCTTGTTTCAATGTTTCTGGTTCTGTCTGGCGTATTGTTCTTGTGTATTGGATCCTGCGCCGCTTTCACTCCCATTGATAATTATTTGATATCATGTGGTTCTACACAAAACATCACGTTTCAAGGAAGAACTTATGTTCCTGATTCTGGACATTCCTTGTTCGCCATTGATGGTGGAAGCTCTGTTGTTGTTAGTTCTAAAGGCACAAGTGAGCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACCGGCATTGCGTCGTATAAATTCGATATCAAGAAAGAAGGTCGGCATTGGGTTCGGTTGTACTTTTATCCTATTCCGAAGTCGGAGCGGAATCTGGAGTCTGCGTCGATTACTGTTGTTACTGAGAAGTTTGTGTTGTTGAATAACTTCACTTTCAAGAACTATAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTGACTTCGGATTCCTTGACGCTTACTTTCATCCCGTTTAATGGTTCGGTATCGTTTGTTAATGCGATCGAGGTTGTTTCGATGCCTGATGAGCTGATACCTGATCAAGCATTGGCTTTGAATCCATCTGCTCCGTTTAGCGGTATCTCTGAACTTGCTTTCGAAACTGTTTATCGACTAAACATGGGAGGTCCTTTACTCACTTCGCAAAATGATACACTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAATAGTTCTGCAGTGAATGTCTCGGCTAACCCGGGGAGTATAAAGTATCATGCCGGTGTTACGCCAGAAACTGCACCGAACTTGGTTTATGCTACTGCCGATGCCATGGGAGACCCGAATGTACCGAACGTGAACTTTAACTTGACTTGGGTTTTCTCTGTCGAGCCAAATTTTCAATACTTCGTTCGAGTACACTTTTGTGATATCATGAGCAAGGCTCTTAATAGTCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTTTGGGAAGCTTCGATCTATCGTCGTTAACGGGTGACTTGGGCGTGCCTTATTACAAAGACTTCATTTCGAACTCAGCAGATTCGGCTACTTTGACCGTTAGTGTCGGTCCAGATACGATGGCAGACATCACCAATGCAACCATGAATGGCTTGGAGATCATGAAAATGAACAATCGAGTCGGGAGCTTGGATGGAACTTCGTCCGTTGAAAGCCTTTTGCCGAATGCGCCCTCAAAGAAGAACAATATAGCAATAATTGTTGGTTCTGTTTCGGGAGCCATAGTAGCCATTGCTTTGCTCGTCTTGTGTTACTGCTGTTTCGTACGTCGTAAGTCGAAGTCTACTCAACCAGCACAACCATGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATGACAAAGGTGTCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCCTTTCATTGACTTCCTCCAGTCTTGGCAGATTCTTCTCGTTTCAGGAAATTCTCGACGCTACGAACAAATTCGACGAAAATCTACTCCTTGGAGTTGGCGGTTTCGGTAGAGTTTACAAGGGAACACTTGAAGATGGTGTAAAGGTTGCTGTTAAAAGAGGTAACCCGAGATCAGAACAAGGTCTTGCTGAATTTCGAACCGAAATCGAAATGTTATCAAAGCTCAGACATCGTCACCTAGTGTCTCTTATTGGCTACTGTGACGAACGATCGGAAATGGTTCTTGTCTACGAATACATGGCAAATGGACCTCTCAGGAGTCACTTGTATGGAACCGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATCGGTGCTGCTAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATTATACACCGAGATGTCAAAACCACGAACATTCTCTTGGACGAGAATTTCGTCGCCAAAGTTGCAGATTTCGGTCTCTCAAAAACCGGACCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGACCCCGAATACTTCAGACGACAGCAGCTGACCGAGAAGTCCGACGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTCTGTACAAGGCCAGCTCTAAACCCTGTTCTGCCTAGAGAACAAGTCAATATAGCAGAATGGGCAATGACTTGGCAGAAGAAAGGCATGCTAGATAACATCATGGACCAAAATCTGGTAGGGAAAGTTAATCCAGCATCGCTTAAGAAGTTCGGTGAAACAGCGGAGAAATGTTTAGCCGAGTATGGTGTCGACAGGCCGTCCATGGGTGACGTCCTGTGGAACCTGGAATACGCTCTTCAGCTCGAGGAAACGTCGTCTGCTCTAATGGAACCCGAAGACAACAGCACGAACCACATCCCTACCATCCAACTGACTCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCGGGCACCGATGACGACGCAGAAGACGTTGCAACGAGTGCAGTGTTTTCGCAGCTCGTAAATCCTCGTGGAAGATGA 2529 44.8 MVKMKLVSMFLVLSGVLFLCIGSCAAFTPIDNYLISCGSTQNITFQGRTYVPDSGHSLFAIDGGSSVVVSSKGTSEPSPIYQSARVFTGIASYKFDIKKEGRHWVRLYFYPIPKSERNLESASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPFNGSVSFVNAIEVVSMPDELIPDQALALNPSAPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSANPGSIKYHAGVTPETAPNLVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNSLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSATLTVSVGPDTMADITNATMNGLEIMKMNNRVGSLDGTSSVESLLPNAPSKKNNIAIIVGSVSGAIVAIALLVLCYCCFVRRKSKSTQPAQPWLPLPLYGNSQTMTKVSTTSQKSGTASFLSLTSSSLGRFFSFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGVKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDNIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDVATSAVFSQLVNPRGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4556558 4559086 + CmoCh09G008790.1 Cmo09g00879 388881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00879 842 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 834 - -
Cmo09g00879 842 SMART serkin_6 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00879 842 Pfam Protein tyrosine and serine/threonine kinase 506 767 IPR001245 GO:0004672|GO:0006468
Cmo09g00879 842 SUPERFAMILY Protein kinase-like (PK-like) 477 772 IPR011009 -
Cmo09g00879 842 PANTHER OS07G0166700 PROTEIN 19 834 IPR045272 GO:0004714|GO:0006468
Cmo09g00879 842 CDD STKc_IRAK 507 772 - -
Cmo09g00879 842 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Cmo09g00879 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cmo09g00879 842 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00879 842 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Cmo09g00879 842 Gene3D Phosphorylase Kinase; domain 1 459 576 - -
Cmo09g00879 842 Pfam Malectin-like domain 35 385 IPR024788 -
Cmo09g00879 842 Gene3D - 32 183 - -
Cmo09g00879 842 Gene3D - 206 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00846 Cmo-Chr2:5146479 Cmo09g00879 Cmo-Chr9:4556558 0 dispersed
Cmo03g00681 Cmo-Chr3:6011431 Cmo09g00879 Cmo-Chr9:4556558 1.32E-74 dispersed
Cmo03g01453 Cmo-Chr3:10495984 Cmo09g00879 Cmo-Chr9:4556558 0 dispersed
Cmo04g00256 Cmo-Chr4:1274910 Cmo09g00879 Cmo-Chr9:4556558 0 dispersed
Cmo07g00058 Cmo-Chr7:341576 Cmo09g00879 Cmo-Chr9:4556558 0 dispersed
Cmo09g00879 Cmo-Chr9:4556558 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo01g01242 Cmo-Chr1:9971509 Cmo09g00879 Cmo-Chr9:4556558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74579 PF12819 Malectin_like 1.70E-39 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00879 - - csv:101215627 1567.36