Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00901 ATGGCAAATCCTCCTCCAAAATCCTTCATAAAGGCGGCAACTCTGTTTCTGTCTCTGTTTCTCTTCTCTCCGCCGTCTGTGGCTGTTGATTTCTTAACAGCCTCACAAAACCTCACCGGCGCCGCCACTCTGGTGTCGGAGAAAGGGTTTTTCGAACTGGGTTTCTTCAGCCCTAGAAATTCCACGAATGTTTACTTGGGAATTTGGTATAAAATCATCCCAATACGTACGATCGTTTGGGTTGCGAACAGAGAAAACCCCATTGTTGATTCTTCCGCTGCTGTTCTTAAAATCAACACTACAACGAATGTTCTTGTTCTCTTGCAGGATAACGCCGTTGTTTGGCTTGCAAATACGTCGAAATCGGTAGAGATTCCGAAACTCCAGCTCTTGGACAATGGAAATCTGGTGTTGAAGGACGCTAAATCGGAGGTAATTTCATGGCAGAGCTTCGATTATCCAACGGATACATTACTACCCGGAATGAAGCTTGGATGGGACTTCGAAAATGGAATCCAACGCCGGTTATCAGCATGGAAAAGCTCCGATGACCCATCTCCGGGGAGTTTAACCATGGAAATGATGAACACAAACTACCCAGAACCGGCGATGTGGAATGGCTCGAAAGAGTTCATGAGGAGTGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACCTCGGCCTTACCGATTTTGGTCTACAGCTACGTAAACAACAAATCCGAGCTCTCTTACAGCTATGAACTCATAAACTCCTCATTAATCGGAAGAATGGTGCTGAATCAGACGCTGACGAGAAGAGAGGCATGGATATGGTCGGATTCTGAGAAGAATTGGAAGCTATATGCAACTATGCCGAGGGATTACTGCGACACCTACGGGCTTTGTGGAGCGTTTGGGAGCTGCAACATTGAGCTAACACCAGCTTGTCAATGTCTACAAGGGTTTCATCCAAAAGTGCCTGAGAAGTGGAATTTGATGGATTATGCTGATGGGTGTGTAAGAAATAAGCCCTTGAATTGTTCTTCTACTGATAAACTTGGGTTTGCGCAGATTCCTGGGCTGAAATTGCCTGATACTCAGCTAACTTGGGTTAATGAAAGCATGAGCTTAAACGAGTGTAGAGACAAGTGTTTGAGGAACTGTTCTTGTGTGGCATTTGCCAATACTGACATCAGGGGCTCAGGGAGTGGCTGCGCTATTTGGCTTGGGGATCTTATTGATATCAAAGTGGTTCGAAGAGGGGGCCAGGATTTGTATGTTAGGATGCTGGCTTCTGAATTGGAGACGAAGAAGAAGACGAGCTCGGTTGTCGTCGGCGTTATCATCGGAGCGACCGTTCTGGTGATTGCTGGTCTGGTTTTGATTGGGTTTTACATCATTAGAAGCAAGAGGAGAAGCCTTGAAGGAATGGGCAAGGATCTTGGACAGCAAGAAGACTTGGAGCTTCCATTCTTGGACTTGGCAACTATATCCAATGCCACAGACAATTTTGCAAGCTACAATAAGCTCGGAGAAGGTGGCTTCGGTGCAGTTTTTCGGGGTAGGCTTGCAGATGGACAAGAAATTGCAGTAAAGAGACTTTCTAGCTATTCGAGACAAGGAACCGAAGAATTTAAGAACGAAGTGATACTCATCGCCAAACTTCAACATCGAAATCTCGTAAAACTTCTCGGTTGTTGCATCGAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCCAACAATAGTTTGGACTCCTTCATATTTGATAACGATAGAAAGAAGCTTTTAGATTGGTCGAAACGATTCAATATCATATGCGGAGTAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGAATTATACATAGAGATTTAAAAGCAAGTAACGTCTTGCTTGATATCGATATGAATCCGAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGATCAAACCGAAGGAAATACTCGGAGAGTGGTCGGAACGTATGGGTATATGGCACCAGAATACGCCATTGACGGACAGTTTTCCATCAAATCAGATGTCTTTAGTTTTGGGATTTTATTGTTGGAAATCGTAAGTGGAAAGAAGAACCGAGGAATTTTCCGCCCTAACCAAGCTCTCAACCTTATTGGACACGCATGGAAGTTGTGGAATGAAGGAAAACCATTAGAGTTGGTCGACGCAAGCATGGGAGAATCTTATGCTCTATCTGAAGTGTTACGATGCATTCATGTTAGTCTTTTGTGCTTGCAACAGCATCCCGAGGATAGACCGACCATGTCGAATGTGGTATTAATGCTAAGTAGTGAGAGTACCTTGGCACAACCGAAACAACCGGGATTTTACATGGAAACGGGTCCTGTTGAAGCATATTCTCATTCTAGCAAGAACGAATCTTCTACTAATGAATTAACTATTACGCTCATGGAGGCTAGATAA 2448 44.24 MANPPPKSFIKAATLFLSLFLFSPPSVAVDFLTASQNLTGAATLVSEKGFFELGFFSPRNSTNVYLGIWYKIIPIRTIVWVANRENPIVDSSAAVLKINTTTNVLVLLQDNAVVWLANTSKSVEIPKLQLLDNGNLVLKDAKSEVISWQSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTLTRREAWIWSDSEKNWKLYATMPRDYCDTYGLCGAFGSCNIELTPACQCLQGFHPKVPEKWNLMDYADGCVRNKPLNCSSTDKLGFAQIPGLKLPDTQLTWVNESMSLNECRDKCLRNCSCVAFANTDIRGSGSGCAIWLGDLIDIKVVRRGGQDLYVRMLASELETKKKTSSVVVGVIIGATVLVIAGLVLIGFYIIRSKRRSLEGMGKDLGQQEDLELPFLDLATISNATDNFASYNKLGEGGFGAVFRGRLADGQEIAVKRLSSYSRQGTEEFKNEVILIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNNSLDSFIFDNDRKKLLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIVSGKKNRGIFRPNQALNLIGHAWKLWNEGKPLELVDASMGESYALSEVLRCIHVSLLCLQQHPEDRPTMSNVVLMLSSESTLAQPKQPGFYMETGPVEAYSHSSKNESSTNELTITLMEAR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4698818 4703160 + CmoCh09G009010.1 Cmo09g00901 388903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00901 815 Pfam Protein tyrosine and serine/threonine kinase 502 768 IPR001245 GO:0004672|GO:0006468
Cmo09g00901 815 Pfam PAN-like domain 346 410 IPR003609 -
Cmo09g00901 815 Gene3D Hepatocyte Growth Factor 341 425 - -
Cmo09g00901 815 CDD B_lectin 38 154 IPR001480 -
Cmo09g00901 815 Pfam D-mannose binding lectin 77 180 IPR001480 -
Cmo09g00901 815 PIRSF SRK 4 815 IPR024171 GO:0004674
Cmo09g00901 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Cmo09g00901 815 CDD STKc_IRAK 505 770 - -
Cmo09g00901 815 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Cmo09g00901 815 SMART ntp_6 345 424 IPR003609 -
Cmo09g00901 815 SUPERFAMILY Protein kinase-like (PK-like) 485 770 IPR011009 -
Cmo09g00901 815 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Cmo09g00901 815 CDD PAN_AP_plant 339 423 - -
Cmo09g00901 815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 812 - -
Cmo09g00901 815 Gene3D Phosphorylase Kinase; domain 1 464 574 - -
Cmo09g00901 815 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00901 815 Gene3D - 26 151 IPR036426 -
Cmo09g00901 815 Gene3D Transferase(Phosphotransferase) domain 1 575 782 - -
Cmo09g00901 815 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Cmo09g00901 815 MobiDBLite consensus disorder prediction 794 815 - -
Cmo09g00901 815 PANTHER - 32 812 - -
Cmo09g00901 815 Pfam Domain of unknown function (DUF3403) 771 815 IPR021820 GO:0004674
Cmo09g00901 815 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Cmo09g00901 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 185 IPR036426 -
Cmo09g00901 815 SMART blect_4 35 154 IPR001480 -
Cmo09g00901 815 SMART serkin_6 499 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01225 Cmo-Chr1:9840485 Cmo09g00901 Cmo-Chr9:4698818 3.44E-06 dispersed
Cmo04g01090 Cmo-Chr4:5510873 Cmo09g00901 Cmo-Chr9:4698818 1.00E-99 dispersed
Cmo09g00901 Cmo-Chr9:4698818 Cmo16g00870 Cmo-Chr16:4644745 0 dispersed
Cmo13g00710 Cmo-Chr13:7186611 Cmo09g00901 Cmo-Chr9:4698818 0 dispersed
Cmo19g00983 Cmo-Chr19:8830134 Cmo09g00901 Cmo-Chr9:4698818 1.92E-173 dispersed
Cmo08g00631 Cmo-Chr8:3836941 Cmo09g00901 Cmo-Chr9:4698818 1.40E-159 transposed
Cmo13g01062 Cmo-Chr13:8829435 Cmo09g00901 Cmo-Chr9:4698818 2.16E-115 transposed
Cmo01g01224 Cmo-Chr1:9834744 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
Cmo13g00707 Cmo-Chr13:7177217 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
Cmo03g00525 Cmo-Chr3:5400189 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
Cmo07g00278 Cmo-Chr7:1365082 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74580 PF07714 PK_Tyr_Ser-Thr 5.20E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00901 - - csv:101216184 1355.89